Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006457.1-P | Field mustard | cytosol | 96.88 | 97.64 |
| CDX70816 | Canola | cytosol | 97.35 | 97.27 |
| CDY51228 | Canola | cytosol | 97.51 | 96.68 |
| Solyc11g013290.1.1 | Tomato | cytosol | 24.4 | 88.42 |
| KRG97079 | Soybean | nucleus | 83.4 | 83.79 |
| KRH68821 | Soybean | nucleus | 83.4 | 83.79 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 81.68 | 83.11 |
| Solyc11g013280.1.1 | Tomato | cytosol | 55.11 | 77.27 |
| Os03t0143800-01 | Rice | cytosol | 73.81 | 73.64 |
| OQU93249 | Sorghum | cytosol | 73.27 | 73.15 |
| Zm00001d027633_P011 | Maize | mitochondrion | 59.24 | 73.01 |
| TraesCS4D01G306200.4 | Wheat | plastid | 73.34 | 72.89 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 73.27 | 72.81 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 73.27 | 72.81 |
| HORVU4Hr1G078840.3 | Barley | plastid | 73.27 | 68.81 |
| GSMUA_Achr4P00570_001 | Banana | endoplasmic reticulum, plasma membrane | 38.74 | 67.8 |
| Os03t0143900-00 | Rice | extracellular | 4.21 | 19.64 |
Protein Annotations
| MapMan:20.2.2.2.1 | EntrezGene:831959 | ProteinID:AED92556.1 | ArrayExpress:AT5G18410 | EnsemblPlantsGene:AT5G18410 | RefSeq:AT5G18410 |
| TAIR:AT5G18410 | RefSeq:AT5G18410-TAIR-G | EnsemblPlants:AT5G18410.1 | TAIR:AT5G18410.1 | EMBL:AY787212 | Unigene:At.43431 |
| InterPro:Cytoplasmic_FMR1-int | InterPro:DUF1394 | RefSeq:NP_197342.3 | PFAM:PF05994 | PFAM:PF07159 | Symbol:PIR |
| PIRSF:PIRSF008153 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01698 | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 | UniParc:UPI000046F7CB |
| SEG:seg | : | : | : | : | : |
Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
Coordinates
chr5:-:6097298..6104980
Molecular Weight (calculated)
145494.0 Da
IEP (calculated)
5.798
GRAVY (calculated)
-0.093
Length
1283 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVDTKRF MQTAPWLGLI PGAEGQIVNA QDGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG
1101: GSVLEYTLAF TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITAPQSA QHEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE
1201: VETVSASHTH RNPQIHQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFETLPQKG TVG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVDTKRF MQTAPWLGLI PGAEGQIVNA QDGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG
1101: GSVLEYTLAF TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITAPQSA QHEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE
1201: VETVSASHTH RNPQIHQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFETLPQKG TVG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.