Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0120800-01 | |
| Os08t0544500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18410.1 | Os02t0120800-01 | AT1G20090.1 | 15294869 |
| AT5G18410.1 | Os08t0544500-01 | AT2G35110.1 | 15294869 |
| AT5G18410.1 | Os08t0544500-01 | AT2G35110.1 | 15296760 |
| AT5G18410.1 | Os08t0544500-01 | AT2G35110.1 | 17267444 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g013280.1.1 | Tomato | cytosol | 16.0 | 4.81 |
| CDX70818 | Canola | cytosol | 1.82 | 4.76 |
| AT5G18410.1 | Thale cress | cytosol | 19.64 | 4.21 |
| Bra006457.1-P | Field mustard | cytosol | 19.27 | 4.16 |
| CDX70816 | Canola | cytosol | 19.27 | 4.13 |
| CDY51228 | Canola | cytosol | 19.27 | 4.1 |
| Os03t0143800-01 | Rice | cytosol | 18.91 | 4.04 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 18.18 | 3.97 |
| Solyc11g013290.1.1 | Tomato | cytosol | 3.27 | 2.54 |
Protein Annotations
| EnsemblPlants:Os03t0143900-00 | EnsemblPlantsGene:Os03g0143900 | EntrezGene:9270488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0048046 |
| InterPro:Dirigent | PANTHER:PTHR21495 | PANTHER:PTHR21495:SF88 | PFAM:PF03018 | ProteinID:AAO17346.1 | ProteinID:ABF93935.1 |
| ProteinID:BAH91992.1 | ProteinID:BAS82249.1 | RefSeq:XP_015631012.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI00000ADC44 |
| UniProt:Q8H042 | MapMan:35.1 | : | : | : | : |
Description
Plant disease resistance response protein family protein. (Os03t0143900-00)
Coordinates
chr3:+:2449426..2450253
Molecular Weight (calculated)
27318.7 Da
IEP (calculated)
6.505
GRAVY (calculated)
0.222
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFKSPAIP LAALVITVLH IAATHAQIPA ATTTGAAVSA TNPQNGGGGV SGGVGATAGG AHEPLELYMH DILGGSSPTA RPITGLLGNI YNGQVPFARP
101: IGFATPKNGV PIPNSNGAIP TYNGNNGIPL DTGLSGAGFL QPAKGASAAQ VQLGPDGLSL GFGTITVIDD VLTSGPDLGA QPLGRAQGVY VASAADGSAQ
201: MMAFTAMMEG GEYGDTLNFF GVYKVGSTMC KLSITGGTGK FKGACGFAEV RPLIATGQHV TDGAETLLRI SVHLA
101: IGFATPKNGV PIPNSNGAIP TYNGNNGIPL DTGLSGAGFL QPAKGASAAQ VQLGPDGLSL GFGTITVIDD VLTSGPDLGA QPLGRAQGVY VASAADGSAQ
201: MMAFTAMMEG GEYGDTLNFF GVYKVGSTMC KLSITGGTGK FKGACGFAEV RPLIATGQHV TDGAETLLRI SVHLA
001: MMKQSPFSLL TSIFLIAALF TATTALDPAP EDPIFELYMH DILGGSSPTA RPITGLLGNI YNGQVPFAKQ IGFVPPQNGV AIPNANGAMP TVNGINGIPL
101: GTGLSGTAFS GQNLNGIQTQ LGPDGLSLGF GTITVIDDII TSGPDLGSQP LGKAQGVYVA SSADGSTQMM AFTAMLEGGE YNDNLNFYGI YRIGSAMSHL
201: SVTGGTGRFK NACGFAEVRP LIPAGQHFVD GAEMLLRIIV HLKY
101: GTGLSGTAFS GQNLNGIQTQ LGPDGLSLGF GTITVIDDII TSGPDLGSQP LGKAQGVYVA SSADGSTQMM AFTAMLEGGE YNDNLNFYGI YRIGSAMSHL
201: SVTGGTGRFK NACGFAEVRP LIPAGQHFVD GAEMLLRIIV HLKY
Arabidopsis Description
DIR18Dirigent protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0H8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.