Factsheet for Os02t0120800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 16531052
cytosol: 20203239
nucleus: 20203239
plasma membrane: 20203239

plasma membrane: 18260611
plasma membrane: 28056797

gfp PMID: 20203239 doi

L Chen, K Shiotani, T Togashi, D Miki, M Aoyama, HL Wong, T Kawasaki, K Shimamoto

Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192 Japan.

gfp PMID: 16531052 doi

YH Jung, GK Agrawal, R Rakwal, JA Kim, MO Lee, PG Choi, YJ Kim, MJ Kim, J Shibato, SH Kim, H Iwahashi, NS Jwa

Department of Molecular Biology, College of Natural Science, Sejong University, Seoul 143-747, Korea.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0719000-01
Os03t0143800-01
Os03t0143900-00
Os03t0328000-01
Os06t0318300-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	Os03t0328000-01	AT4G16340.1	17267444
AT1G20090.1	Os03t0143800-01	AT5G18410.1	15294869
AT1G20090.1	Os03t0143900-00	AT5G18410.1	15294869
AT1G75840.1	Os02t0719000-01	AT3G07880.1	10798620
AT1G75840.1	Os06t0318300-02	AT3G07880.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06186	Sorghum	cytosol	100.0	100.0
Zm00001d015036_P005	Maize	cytosol	100.0	100.0
TraesCS6D01G068500.2	Wheat	cytosol	98.48	98.48
TraesCS6B01G094700.2	Wheat	cytosol	98.48	98.48
TraesCS6A01G070700.2	Wheat	cytosol	98.48	98.48
VIT_18s0001g14670.t01	Wine grape	cytosol	92.39	92.39
Os02t0834000-01	Rice	cytosol	91.88	91.88
KRH61024	Soybean	cytosol	90.36	90.82
KRH61026	Soybean	cytosol, nucleus, plastid	90.36	90.36
KRH51687	Soybean	cytosol, nucleus, plastid	90.36	90.36
AT1G75840.1	Thale cress	cytosol	89.85	90.31
Bra008227.1-P	Field mustard	cytosol	89.34	89.8
CDY39066	Canola	cytosol	89.34	89.8
CDY13528	Canola	cytosol	89.34	89.8
CDY43414	Canola	cytosol	89.34	89.34
CDY54338	Canola	cytosol	89.34	89.34
CDY62937	Canola	cytosol	88.83	89.29
Bra015807.1-P	Field mustard	cytosol	88.83	89.29
Bra016477.1-P	Field mustard	cytosol	88.83	89.29
CDX87656	Canola	cytosol	88.83	89.29
CDX73206	Canola	cytosol	88.83	89.29
Bra003739.1-P	Field mustard	cytosol	88.32	89.23
CDX68116	Canola	cytosol	88.32	89.23
CDX85925	Canola	cytosol	88.32	89.23
AT1G20090.1	Thale cress	cytosol	87.82	88.72
Bra012210.1-P	Field mustard	cytosol	88.32	88.32
Os02t0312600-01	Rice	cytosol	85.79	85.79
CDY57592	Canola	cytosol	88.32	85.29
Os02t0742200-01	Rice	cytosol	83.76	77.1
Os06t0234200-03	Rice	cytosol	82.23	75.35
Os05t0513800-01	Rice	plasma membrane	77.16	71.03
Os01t0540300-00	Rice	cytosol	31.98	70.79
HORVU6Hr1G012690.3	Barley	plastid	98.98	68.9
Os01t0229400-02	Rice	endoplasmic reticulum, plasma membrane	74.62	68.69
Os11t0303400-02	Rice	cytosol	23.86	40.87

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	EntrezGene:4328116	ProteinID:AAT84075.1	EMBL:AF250327	EMBL:AK069443
EMBL:AK100842	ProteinID:BAD07596.1	ProteinID:BAD08136.1	ProteinID:BAF07626.1	ProteinID:BAS76704.1	ProteinID:EEE56200.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	InterPro:IPR003578	EnsemblPlantsGene:Os02g0120800	EnsemblPlants:Os02t0120800-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF261	UniProt:Q6ZHA3	SMART:SM00173
SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho
TIGRFAMs:TIGR00231	UniParc:UPI000000542A	RefSeq:XP_015625732.1	SEG:seg	:	:

Description

RAC/ROP-TYPE GTPASE 6Similar to Small GTP-binding protein (Fragment). (Os02t0120800-01);Similar to Small GTP-binding protein (Fragment). (Os02t0120800-02)

Coordinates

chr2:-:1080560..1084282

Molecular Weight (calculated)

21625.1 Da

IEP (calculated)

9.501

GRAVY (calculated)

-0.101

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIILVGTKL DLRDDKQFFV DHPGAVPITT AQGEELRKQI GAPYYIECSS KTQLNVKGVF DAAIKVVLQP PKAKKKKKAQ RGACSIL

Best Arabidopsis Sequence Match ( AT3G51300.1 )
(BLAST)

001: MSASRFVKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELRKQI GAPTYIECSS KTQENVKAVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC11Rac-like GTP-binding protein ARAC11 [Source:UniProtKB/Swiss-Prot;Acc:P92978]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.