Factsheet for Os02t0312600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 20203239
nucleus: 20203239
plasma membrane: 20203239

gfp PMID: 20203239 doi

L Chen, K Shiotani, T Togashi, D Miki, M Aoyama, HL Wong, T Kawasaki, K Shimamoto

Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192 Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0298700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45970.1	Os03t0298700-01	AT2G38440.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	90.86	91.33
GSMUA_Achr6P13740_001	Banana	cytosol	87.31	87.76
KRH50139	Soybean	cytosol, nucleus, plastid	87.31	87.76
Solyc02g077400.2.1	Tomato	cytosol, plastid	87.31	87.31
PGSC0003DMT400027852	Potato	cytosol	87.31	87.31
Os02t0834000-01	Rice	cytosol	86.8	86.8
Os02t0120800-01	Rice	plasma membrane	85.79	85.79
Bra025045.1-P	Field mustard	cytosol	85.28	83.58
CDY58056	Canola	cytosol	85.28	83.58
AT5G45970.1	Thale cress	cytosol	85.28	83.58
CDX77623	Canola	cytosol	84.77	83.08
CDY57346	Canola	cytosol	84.26	82.59
Bra022004.1-P	Field mustard	cytosol	83.25	81.59
CDY67441	Canola	cytosol	82.74	81.5
KRH20356	Soybean	cytosol	86.8	80.28
VIT_10s0003g00570.t01	Wine grape	cytosol	67.51	77.78
Os02t0742200-01	Rice	cytosol	80.2	73.83
Os06t0234200-03	Rice	cytosol	79.19	72.56
Os01t0540300-00	Rice	cytosol	31.98	70.79
Os05t0513800-01	Rice	plasma membrane	74.62	68.69
Os01t0229400-02	Rice	endoplasmic reticulum, plasma membrane	72.59	66.82
Os11t0303400-02	Rice	cytosol	23.86	40.87

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	EntrezGene:4329132	EMBL:AF376055	ProteinID:BAD15789.1	ProteinID:BAD15966.1
ProteinID:BAF08567.1	ProteinID:BAS78323.1	ProteinID:EEE56825.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	EnsemblPlantsGene:Os02g0312600	EnsemblPlants:Os02t0312600-01
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF178
UniProt:Q6Z7L8	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI00000A17B7	RefSeq:XP_015627590.1	SEG:seg

Description

RAC/ROP-TYPE GTPASE 7Rac-like GTP-binding protein 7. (Os02t0312600-01)

Coordinates

chr2:-:12324596..12326744

Molecular Weight (calculated)

21979.5 Da

IEP (calculated)

9.383

GRAVY (calculated)

-0.160

Length

197 amino acids

Sequence
(BLAST)

001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIHKKW
101: IPELRHYAPN VPIVLVGTKL DLREDKQFFL DHPGLAPIST AQGEELKRMI GAAAYIECSS KTQQNVKSVF DSAIKVVLCP PKPKKKNTRK QRSCWIL

Best Arabidopsis Sequence Match ( AT4G35020.3 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL

Arabidopsis Description

ARAC3At4g35020 [Source:UniProtKB/TrEMBL;Acc:Q5PNX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.