Factsheet for Os01t0229400-02

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 20203239
endoplasmic reticulum: 20227662

gfp PMID: 20203239 doi

L Chen, K Shiotani, T Togashi, D Miki, M Aoyama, HL Wong, T Kawasaki, K Shimamoto

Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192 Japan.

gfp PMID: 20227662 doi

L Chen, S Hamada, M Fujiwara, T Zhu, NP Thao, HL Wong, P Krishna, T Ueda, H Kaku, N Shibuya, T Kawasaki, K Shimamoto

Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19253	Sorghum	cytosol	88.32	87.5
TraesCS3D01G161900.1	Wheat	cytosol	87.38	85.78
TraesCS3A01G154600.1	Wheat	cytosol	87.38	85.0
TraesCS3B01G180900.1	Wheat	cytosol	86.92	83.78
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	79.44	80.95
Os05t0513800-01	Rice	plasma membrane	80.84	80.84
Solyc07g020800.2.1	Tomato	cytosol	78.5	80.0
PGSC0003DMT400022302	Potato	cytosol	78.5	80.0
Solyc12g007210.1.1	Tomato	cytosol	77.57	78.67
Zm00001d037911_P008	Maize	cytosol	85.98	78.63
CDY35236	Canola	cytosol	76.64	78.47
CDY06854	Canola	cytosol	76.64	78.47
Bra011072.1-P	Field mustard	cytosol	76.64	78.47
AT4G28950.1	Thale cress	cytosol	76.64	78.47
PGSC0003DMT400000816	Potato	cytosol	76.17	77.25
Os02t0834000-01	Rice	cytosol	71.03	77.16
Os01t0540300-00	Rice	cytosol	31.31	75.28
Os02t0120800-01	Rice	plasma membrane	68.69	74.62
Os02t0312600-01	Rice	cytosol	66.82	72.59
Os02t0742200-01	Rice	cytosol	71.5	71.5
Os06t0234200-03	Rice	cytosol	71.5	71.16
KRG90165	Soybean	cytosol	33.18	59.17
Os11t0303400-02	Rice	cytosol	23.83	44.35
HORVU3Hr1G052560.3	Barley	cytosol	57.94	41.75

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	EntrezGene:4325879	PDB:4U5X	EMBL:AB029508	EMBL:AP001859
ProteinID:BAF04400.1	ProteinID:BAS71158.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019899	InterPro:IPR003578
EnsemblPlantsGene:Os01g0229400	EnsemblPlants:Os01t0229400-02	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420
PANTHER:PTHR24072	PANTHER:PTHR24072:SF154	UniProt:Q9SSX0	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI00000A17B8
RefSeq:XP_015621645.1	:	:	:	:	:

Description

RAC/ROP-TYPE GTPASE 1Similar to Rac-like GTP-binding protein 1. (Os01t0229400-01);Small GTP-binding protein, GTPase, Regulation of cell death, Disease resistance, Immune responses (Os01t0229400-02)

Coordinates

chr1:-:7164735..7167377

Molecular Weight (calculated)

23718.6 Da

IEP (calculated)

9.415

GRAVY (calculated)

-0.104

Length

214 amino acids

Sequence
(BLAST)

001: MSSAAAATRF IKCVTVGDGA VGKTCMLICY TCNKFPTDYI PTVFDNFSAN VSVDGSVVNL GLWDTAGQED YSRLRPLSYR GADVFILSFS LISRASYENV
101: QKKWMPELRR FAPGVPVVLV GTKLDLREDR AYLADHPASS IITTEQGEEL RKLIGAVAYI ECSSKTQRNI KAVFDTAIKV VLQPPRHKDV TRKKLQSSSN
201: RPVRRYFCGS ACFA

Best Arabidopsis Sequence Match ( AT4G28950.1 )
(BLAST)

001: MSASKFIKCV TVGDGAVGKT CMLICYTSNK FPTDYIPTVF DNFSANVAVD GQIVNLGLWD TAGQEDYSRL RPLSYRGADI FVLAFSLISK ASYENVLKKW
101: MPELRRFAPN VPIVLVGTKL DLRDDKGYLA DHTNVITSTQ GEELRKQIGA AAYIECSSKT QQNVKAVFDT AIKVVLQPPR RKEVPRRRKN HRRSGCSIAS
201: IVCGGCTAA

Arabidopsis Description

ARAC7Rac-like GTP-binding protein ARAC7 [Source:UniProtKB/Swiss-Prot;Acc:O82480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.