Factsheet for Solyc02g077400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g014980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45970.1	Solyc09g014980.2.1	AT2G38440.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027852	Potato	cytosol	100.0	100.0
Os02t0312600-01	Rice	cytosol	87.31	87.31
GSMUA_Achr10P...	Banana	cytosol	86.8	87.24
KRH50139	Soybean	cytosol, nucleus, plastid	86.29	86.73
Bra025045.1-P	Field mustard	cytosol	87.31	85.57
CDY58056	Canola	cytosol	87.31	85.57
AT5G45970.1	Thale cress	cytosol	86.8	85.07
CDX77623	Canola	cytosol	86.8	85.07
GSMUA_Achr6P13740_001	Banana	cytosol	84.26	84.69
CDY57346	Canola	cytosol	86.29	84.58
Bra022004.1-P	Field mustard	cytosol	85.28	83.58
CDY67441	Canola	cytosol	84.77	83.5
Solyc02g083580.2.1	Tomato	nucleus	83.25	83.25
Solyc01g111560.2.1	Tomato	cytosol, nucleus, plastid	83.25	82.83
Solyc02g062020.2.1	Tomato	plastid	81.22	81.22
VIT_10s0003g00570.t01	Wine grape	cytosol	69.04	79.53
KRH20356	Soybean	cytosol	85.28	78.87
Solyc01g088780.2.1	Tomato	cytosol	80.71	76.44
Solyc03g114070.2.1	Tomato	cytosol	78.68	73.81
Solyc03g033420.2.1	Tomato	cytosol	73.6	73.6
Solyc07g020800.2.1	Tomato	cytosol	76.14	71.43
Solyc12g007210.1.1	Tomato	cytosol	73.1	68.25
Solyc10g055520.1.1	Tomato	cytosol	44.16	54.72

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	InterPro:IPR003578	UniProt:K4B8W6	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF178	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	EnsemblPlantsGene:Solyc02g077400.2	EnsemblPlants:Solyc02g077400.2.1
TIGRFAMs:TIGR00231	UniParc:UPI0002767B29	SEG:seg	:	:	:

Description

Rac-like GTP-binding protein ARAC2 [Source:Projected from Arabidopsis thaliana (AT5G45970) UniProtKB/Swiss-Prot;Acc:Q38903]

Coordinates

chr2:-:42349603..42351610

Molecular Weight (calculated)

21947.6 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.149

Length

197 amino acids

Sequence
(BLAST)

001: MTTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIYKKW
101: IPELRHYAPT IQIVLVGTKL DLREDKQYLS DHPGATPIST AQGEELKKMI GAVAYIECSS KTQQNVKAVF DTAIKVALRP PKMKKRPQKR RTLCAIL

Best Arabidopsis Sequence Match ( AT5G45970.1 )
(BLAST)

001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIHKKW
101: LPELKHYAPG IPIVLVGTKL DLRDDKQFLK DHPGAASITT AQGEELRKMI GAVRYLECSS KTQQNVKAVF DTAIRVALRP PKAKKKIKPL KTKRSRICFF
201: L

Arabidopsis Description

ARAC2ROP7 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.