Factsheet for HORVU6Hr1G012690.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G051250.3
HORVU4Hr1G078840.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	HORVU4Hr1G051250.3	AT4G16340.1	17267444
AT1G20090.1	HORVU4Hr1G078840.3	AT5G18410.1	15294869

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G068500.2	Wheat	cytosol	69.26	99.49
TraesCS6B01G094700.2	Wheat	cytosol	69.26	99.49
TraesCS6A01G070700.2	Wheat	cytosol	69.26	99.49
Zm00001d015036_P005	Maize	cytosol	68.9	98.98
Os02t0120800-01	Rice	plasma membrane	68.9	98.98
EES06186	Sorghum	cytosol	68.9	98.98
VIT_18s0001g14670.t01	Wine grape	cytosol	64.66	92.89
AT1G75840.1	Thale cress	cytosol	63.25	91.33
Bra008227.1-P	Field mustard	cytosol	62.9	90.82
CDY13528	Canola	cytosol	62.9	90.82
CDY39066	Canola	cytosol	62.9	90.82
HORVU6Hr1G095230.1	Barley	cytosol	62.9	90.36
CDY43414	Canola	cytosol	62.9	90.36
CDY54338	Canola	cytosol	62.9	90.36
CDY62937	Canola	cytosol	62.54	90.31
Bra016477.1-P	Field mustard	cytosol	62.54	90.31
CDX73206	Canola	cytosol	62.54	90.31
Bra003739.1-P	Field mustard	cytosol	62.19	90.26
CDX68116	Canola	cytosol	62.19	90.26
CDX85925	Canola	cytosol	62.19	90.26
AT1G20090.1	Thale cress	cytosol	61.84	89.74
Bra012210.1-P	Field mustard	cytosol	62.19	89.34
CDX87656	Canola	cytosol	61.84	89.29
Bra015807.1-P	Field mustard	cytosol	61.84	89.29
CDY57592	Canola	cytosol	62.19	86.27
Zm00001d053899_P001	Maize	cytosol	65.02	79.31
HORVU2Hr1G076740.1	Barley	cytosol	17.67	78.12
HORVU6Hr1G076210.5	Barley	cytosol	56.89	74.88
HORVU1Hr1G076880.4	Barley	cytosol	53.36	69.27
HORVU3Hr1G050740.1	Barley	cytosol	28.62	62.79
HORVU7Hr1G038980.5	Barley	cytosol	55.12	62.4
HORVU3Hr1G050750.1	Barley	cytosol, plasma membrane, plastid	16.96	52.75
HORVU3Hr1G052560.3	Barley	cytosol	36.04	34.34

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	UniProt:A0A287TCP1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
EnsemblPlantsGene:HORVU6Hr1G012690	EnsemblPlants:HORVU6Hr1G012690.3	InterPro:IPR003578	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF261	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI000B470F54
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:24995347..25091926

Molecular Weight (calculated)

30802.4 Da

IEP (calculated)

10.394

GRAVY (calculated)

-0.194

Length

283 amino acids

Sequence
(BLAST)

001: KRRHPAIRRG DRFLGRTPAS LSSPSPALPS ICPRPRAAPP NLNLHTPPWA SLLWPQILTS SPPPLLLPPP PPVSPAASPA ARERGRMSAS RFIKCVTVGD
101: GAVGKTCMLI SYTSNTFPTD YVPTVFDNFS ANVVVDGNTV NLGLWDTAGQ EDYNRLRPLS YRGADVFLLA FSLISKASYE NVSKKWIPEL KHYAPGVPII
201: LVGTKLDLRD DKQFFVDHPG AVPITTAQGE ELKKLIGAPY YIECSSKTQL NVKGVFDAAI KVVLQPPKAK KKKKAQRGAC SIL

Best Arabidopsis Sequence Match ( AT2G17800.2 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC1ROP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.