Factsheet for Zm00001d053899_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007384_P003
Zm00001d012342_P001
Zm00001d017859_P002
Zm00001d024153_P001
Zm00001d027633_P011
Zm00001d029004_P004
Zm00001d035534_P003
Zm00001d035539_P001
Zm00001d038664_P001
Zm00001d042645_P001
Zm00001d046856_P002
Zm00001d047540_P001
Zm00001d051687_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	Zm00001d007384_P003	AT4G16340.1	17267444
AT1G20090.1	Zm00001d012342_P001	AT4G16340.1	17267444
AT1G20090.1	Zm00001d024153_P001	AT4G16340.1	17267444
AT1G20090.1	Zm00001d029004_P004	AT4G16340.1	17267444
AT1G20090.1	Zm00001d035534_P003	AT4G16340.1	17267444
AT1G20090.1	Zm00001d035539_P001	AT4G16340.1	17267444
AT1G20090.1	Zm00001d038664_P001	AT4G16340.1	17267444
AT1G20090.1	Zm00001d042645_P001	AT4G16340.1	17267444
AT1G20090.1	Zm00001d046856_P002	AT4G16340.1	17267444
AT1G20090.1	Zm00001d047540_P001	AT4G16340.1	17267444
AT1G20090.1	Zm00001d027633_P011	AT5G18410.1	15294869
AT1G75840.1	Zm00001d017859_P002	AT3G07880.1	10798620
AT1G75840.1	Zm00001d051687_P001	AT3G07880.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015036_P005	Maize	cytosol	80.17	94.42
TraesCS6D01G068500.2	Wheat	cytosol	78.88	92.89
TraesCS6B01G094700.2	Wheat	cytosol	78.88	92.89
TraesCS6A01G070700.2	Wheat	cytosol	78.88	92.89
VIT_18s0001g14670.t01	Wine grape	cytosol	74.57	87.82
KRH61024	Soybean	cytosol	73.28	86.73
KRH61026	Soybean	cytosol, nucleus, plastid	73.28	86.29
KRH51687	Soybean	cytosol, nucleus, plastid	73.28	86.29
Zm00001d018573_P002	Maize	mitochondrion	72.84	85.79
AT1G75840.1	Thale cress	cytosol	72.41	85.71
Bra008227.1-P	Field mustard	cytosol	72.41	85.71
CDY13528	Canola	cytosol	72.41	85.71
CDY39066	Canola	cytosol	72.41	85.71
CDY43414	Canola	cytosol	72.41	85.28
CDY54338	Canola	cytosol	72.41	85.28
CDY62937	Canola	cytosol	71.98	85.2
CDX87656	Canola	cytosol	71.98	85.2
CDX73206	Canola	cytosol	71.98	85.2
Bra016477.1-P	Field mustard	cytosol	71.98	85.2
Bra015807.1-P	Field mustard	cytosol	71.98	85.2
CDX85925	Canola	cytosol	71.55	85.13
CDX68116	Canola	cytosol	71.55	85.13
Bra003739.1-P	Field mustard	cytosol	71.55	85.13
AT1G20090.1	Thale cress	cytosol	71.12	84.62
Bra012210.1-P	Field mustard	cytosol	71.55	84.26
CDY57592	Canola	cytosol	71.55	81.37
Zm00001d010732_P002	Maize	plasma membrane	61.64	67.45
Zm00001d038688_P002	Maize	cytosol	62.07	66.36
HORVU6Hr1G012690.3	Barley	plastid	79.31	65.02
Zm00001d052273_P004	Maize	plastid	56.47	60.37
Zm00001d037911_P008	Maize	cytosol	58.62	58.12
Zm00001d044802_P001	Maize	cytosol	67.24	54.36
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	67.24	30.83

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:542618	UniProt:A0A1D6QTA8	ProteinID:AQK60678.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF261	SMART:SM00173	SMART:SM00174
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231
UniParc:UPI0008456B8F	EnsemblPlantsGene:Zm00001d053899	EnsemblPlants:Zm00001d053899_P001	EnsemblPlants:Zm00001d053899_T001	SEG:seg	:

Description

Rho-related protein from plants2 Rho-related protein from plants2

Coordinates

chr4:-:243343911..243347690

Molecular Weight (calculated)

25764.2 Da

IEP (calculated)

8.895

GRAVY (calculated)

0.011

Length

232 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLIIL QNPFLNRINI
101: DGSQTFCLLT LNPFYFQWIP ELKHYAPGVP IILVGTKLDL RDDKQFFVDH PGAVPITTAQ GEELRKQIGA PYYIECSSKT QLVLPSAQSF AKHAQYYVEN
201: VKGVFDAAIK VVLQPPKAKK KKKVQRGACS IL

Best Arabidopsis Sequence Match ( AT2G17800.1 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC1ROP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.