Factsheet for Zm00001d018573_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0834000-01	Rice	cytosol	97.97	97.97
HORVU6Hr1G095230.1	Barley	cytosol	94.42	94.42
TraesCS1D01G325200.1	Wheat	cytosol	93.91	93.91
TraesCS1B01G337200.1	Wheat	cytosol	93.91	93.91
GSMUA_Achr9P21050_001	Banana	cytosol	93.4	93.88
GSMUA_Achr1P02620_001	Banana	cytosol, nucleus, plastid	93.4	92.93
TraesCS1A01G323900.1	Wheat	cytosol	92.89	92.89
GSMUA_Achr7P17810_001	Banana	cytosol	92.39	92.86
GSMUA_Achr8P33920_001	Banana	cytosol	90.36	92.23
AT4G35020.2	Thale cress	cytosol	91.88	91.41
Bra011578.1-P	Field mustard	cytosol	91.88	91.41
CDX75480	Canola	cytosol	91.88	91.41
Zm00001d015036_P005	Maize	cytosol	90.86	90.86
CDX71303	Canola	cytosol	81.22	89.39
CDY31409	Canola	cytosol	80.71	88.83
Bra001994.1-P	Field mustard	cytosol, nucleus, plastid	89.34	88.44
CDX69104	Canola	cytosol	89.85	83.89
CDY02239	Canola	cytosol	61.42	77.56
Bra013050.1-P	Field mustard	cytosol	61.42	77.56
CDX89745	Canola	cytosol	72.59	74.48
CDY02240	Canola	cytosol	71.57	74.21
Zm00001d010732_P002	Maize	plasma membrane	78.68	73.11
Zm00001d053899_P001	Maize	cytosol	85.79	72.84
Bra013051.1-P	Field mustard	cytosol	71.57	72.68
KXG31438	Sorghum	cytosol	77.16	72.04
Zm00001d038688_P002	Maize	cytosol	78.17	70.97
CDX89746	Canola	cytosol	75.63	67.12
Zm00001d052273_P004	Maize	plastid	68.53	62.21
Zm00001d037911_P008	Maize	cytosol	73.6	61.97
Zm00001d044802_P001	Maize	cytosol	83.25	57.14
HORVU3Hr1G050750.1	Barley	cytosol, plasma membrane, plastid	23.86	51.65
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	81.22	31.62

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	EntrezGene:542739	ProteinID:AQK76496.1	UniProt:B4FNE3	EMBL:BT038631
EMBL:EU968843	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF249
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI00017B6C75	EnsemblPlantsGene:Zm00001d018573	EnsemblPlants:Zm00001d018573_P002	EnsemblPlants:Zm00001d018573_T002
SEG:seg	:	:	:	:	:

Description

Rho-related protein from plants 4 Rho-related protein from plants 4

Coordinates

chr5:+:223568976..223577035

Molecular Weight (calculated)

21664.2 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.090

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFV DHPGAVPIST AQGEELRKLI GAAAYIECSS KTQQNIKAVF DAAIKVVLQP PKQKKRKKKV QKGCTIL

Best Arabidopsis Sequence Match ( AT4G35020.3 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL

Arabidopsis Description

ARAC3At4g35020 [Source:UniProtKB/TrEMBL;Acc:Q5PNX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.