Factsheet for Zm00001d017859_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015036_P005
Zm00001d053899_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07880.1	Zm00001d015036_P005	AT1G75840.1	10798620
AT3G07880.1	Zm00001d053899_P001	AT1G75840.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051687_P001	Maize	cytosol	74.09	78.88
TraesCS6B01G310800.1	Wheat	cytosol	76.52	73.54
CDY31238	Canola	cytosol	30.36	70.75
TraesCS6A01G282400.1	Wheat	cytosol	70.04	66.28
OQU85511	Sorghum	mitochondrion	57.09	66.2
TraesCS6D01G262900.1	Wheat	cytosol	68.83	65.13
Bra040037.1-P	Field mustard	cytosol	58.7	63.88
GSMUA_Achr9P12630_001	Banana	cytosol	61.54	63.87
VIT_00s0187g00210.t01	Wine grape	cytosol	59.11	62.93
Bra001274.1-P	Field mustard	cytosol	53.04	61.79
AT3G07880.1	Thale cress	cytosol	59.51	61.25
GSMUA_Achr7P20430_001	Banana	cytosol	64.37	60.69
KRH14075	Soybean	cytosol	55.47	60.35
VIT_12s0059g00580.t01	Wine grape	cytosol	58.3	60.25
PGSC0003DMT400021800	Potato	cytosol	56.28	59.66
Bra029684.1-P	Field mustard	cytosol	59.51	59.27
CDY35970	Canola	cytosol	59.51	59.27
Solyc05g054110.2.1	Tomato	cytosol	55.87	59.23
GSMUA_Achr5P04110_001	Banana	cytosol	63.16	59.09
Zm00001d010398_P001	Maize	cytosol	50.61	58.96
AT1G62450.1	Thale cress	cytosol	53.04	58.74
CDY28012	Canola	cytosol	58.7	58.7
Zm00001d038046_P003	Maize	cytosol	51.01	58.6
Bra027043.1-P	Field mustard	cytosol	53.04	58.48
CDY19551	Canola	cytosol	53.04	58.48
CDY12949	Canola	cytosol	53.04	58.48
Bra036660.1-P	Field mustard	cytosol	51.82	58.45
KRH74038	Soybean	cytosol	55.06	58.37
CDY15966	Canola	cytosol	52.63	58.04
CDY39796	Canola	cytosol	51.42	57.99
CDY03276	Canola	cytosol	51.42	57.99
KRH36543	Soybean	cytosol	57.89	57.66
CDY26538	Canola	cytosol	52.23	57.59
Bra026994.1-P	Field mustard	cytosol	52.23	57.59
Bra034515.1-P	Field mustard	nucleus	52.23	57.33
CDY32048	Canola	nucleus	52.23	57.33
CDY08673	Canola	cytosol	51.82	57.14
AT1G12070.1	Thale cress	cytosol	51.42	56.95
CDY62159	Canola	cytosol	51.01	56.25
CDY53349	Canola	cytosol	51.01	56.25
Bra016793.1-P	Field mustard	cytosol	50.61	56.05
CDY21031	Canola	cytosol	50.61	56.05
Bra019740.1-P	Field mustard	cytosol	50.61	55.8
PGSC0003DMT400060556	Potato	cytosol	54.66	55.56
Solyc04g014760.2.1	Tomato	nucleus	54.66	55.56
KRH01997	Soybean	cytosol	55.87	55.42
KRH51157	Soybean	cytosol	55.87	55.42
KRH11529	Soybean	nucleus	57.09	55.29
Solyc11g012270.1.1	Tomato	cytosol	53.85	51.15
PGSC0003DMT400034743	Potato	cytosol	53.04	50.38
Os02t0719000-01	Rice	cytosol	70.45	46.15
Zm00001d010397_P002	Maize	cytosol	23.89	34.91

Protein Annotations

EntrezGene:100285962	Gene3D:2.70.50.30	MapMan:27.4.4	UniProt:A0A1D6HIF9	ProteinID:AQK74288.1	ProteinID:AQK74290.1
GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792	InterPro:Ig_E-set	PFAM:PF02115
PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296
UniParc:UPI000221E3F5	EnsemblPlantsGene:Zm00001d017859	EnsemblPlants:Zm00001d017859_P002	EnsemblPlants:Zm00001d017859_T002	SEG:seg	:

Description

Rho GDP-dissociation inhibitor 1

Coordinates

chr5:+:209058601..209062935

Molecular Weight (calculated)

27473.2 Da

IEP (calculated)

4.395

GRAVY (calculated)

-0.672

Length

247 amino acids

Sequence
(BLAST)

001: MSSAVEAISC PKVDVPAGPE PGEPAKEAAP PAEHCDTAPN GKCAPRCHGE EEEEEEDEED EEKAPKAIDL GPMVSIKEQL EKDKDDESLR RWKEQLLGGV
101: DLNSVGETLE PDVKIMSLSI LSPGRPDIVL PLPVEPNGKG VWFTLKEGSP YRLKFTFSVS NNIVSGLRYT NTVWKTGLKV DRAKEMLGTF SPQLEPYTYV
201: TPEDTTPSGM FARGSYSART KFLDDDRKCY LEINYTFDIR REWPSTS

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.