Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19551 | Canola | cytosol | 88.79 | 88.39 |
| CDY39796 | Canola | cytosol | 86.55 | 88.13 |
| Bra027043.1-P | Field mustard | cytosol | 88.34 | 87.95 |
| CDY12949 | Canola | cytosol | 88.34 | 87.95 |
| Bra036660.1-P | Field mustard | cytosol | 86.1 | 87.67 |
| Bra034515.1-P | Field mustard | nucleus | 88.34 | 87.56 |
| CDY32048 | Canola | nucleus | 87.89 | 87.11 |
| CDY03276 | Canola | cytosol | 84.75 | 86.3 |
| CDY08673 | Canola | cytosol | 86.1 | 85.71 |
| AT1G12070.1 | Thale cress | cytosol | 75.78 | 75.78 |
| AT3G07880.1 | Thale cress | cytosol | 63.68 | 59.17 |
| Zm00001d051687_P001 | Maize | cytosol | 56.05 | 53.88 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 56.95 | 53.36 |
| Zm00001d017859_P002 | Maize | cytosol | 58.74 | 53.04 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 61.44 | 52.29 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 56.95 | 49.42 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 58.3 | 49.24 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 57.4 | 49.04 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 57.4 | 49.04 |
| OQU85511 | Sorghum | mitochondrion | 45.74 | 47.89 |
| KXG19891 | Sorghum | cytosol | 57.4 | 45.23 |
| Os06t0318300-02 | Rice | cytosol | 54.71 | 45.19 |
| Os02t0719000-01 | Rice | cytosol | 59.19 | 35.01 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | EntrezGene:842543 | UniProt:A0A178WBH8 | ProteinID:AEE33969.1 | ArrayExpress:AT1G62450 |
| EnsemblPlantsGene:AT1G62450 | RefSeq:AT1G62450 | TAIR:AT1G62450 | RefSeq:AT1G62450-TAIR-G | EnsemblPlants:AT1G62450.1 | TAIR:AT1G62450.1 |
| UniProt:F4HYS9 | GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0030234 | GO:GO:0050790 | InterPro:IPR024792 | InterPro:Ig_E-set |
| RefSeq:NP_176435.1 | ProteinID:OAP15454.1 | PFAM:PF02115 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI |
| SUPFAM:SSF81296 | UniParc:UPI00001631D6 | SEG:seg | : | : | : |
Description
Immunoglobulin E-set superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYS9]
Coordinates
chr1:-:23115536..23117594
Molecular Weight (calculated)
25388.9 Da
IEP (calculated)
4.435
GRAVY (calculated)
-0.746
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLEDEMKKG EASGETSEKM GLSRKNSGSS LSPTEDDEED EDKKLELGPM IALKEQLERD KDDESLRRWK EQLLGVVDLE DVGETPDPVV KILDLTIRSP
101: DREEMVLTIP EDGLPNPKGP WFTIKEGSKY TLVFNFRVTN NIVSGLRYNN TVWKTGVKVD STKAMLGTFS PQAESYQHVM PEEMTPSGMF ARGSYSARTK
201: FIDDDNKCYL EINYTFDIRK SWQ
101: DREEMVLTIP EDGLPNPKGP WFTIKEGSKY TLVFNFRVTN NIVSGLRYNN TVWKTGVKVD STKAMLGTFS PQAESYQHVM PEEMTPSGMF ARGSYSARTK
201: FIDDDNKCYL EINYTFDIRK SWQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.