Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31238 | Canola | cytosol | 43.5 | 91.51 |
| CDY15966 | Canola | cytosol | 87.89 | 87.5 |
| CDY53349 | Canola | cytosol | 87.44 | 87.05 |
| Bra019740.1-P | Field mustard | cytosol | 87.0 | 86.61 |
| Bra026994.1-P | Field mustard | cytosol | 87.0 | 86.61 |
| CDY26538 | Canola | cytosol | 87.0 | 86.61 |
| CDY62159 | Canola | cytosol | 87.0 | 86.61 |
| Bra016793.1-P | Field mustard | cytosol | 83.86 | 83.86 |
| CDY21031 | Canola | cytosol | 83.86 | 83.86 |
| AT1G62450.1 | Thale cress | cytosol | 75.78 | 75.78 |
| AT3G07880.1 | Thale cress | cytosol | 60.99 | 56.67 |
| Zm00001d051687_P001 | Maize | cytosol | 56.05 | 53.88 |
| Zm00001d017859_P002 | Maize | cytosol | 56.95 | 51.42 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 53.81 | 50.42 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 57.85 | 49.24 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 56.5 | 49.03 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 56.95 | 48.66 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 56.5 | 47.73 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 55.61 | 47.51 |
| OQU85511 | Sorghum | mitochondrion | 44.39 | 46.48 |
| KXG19891 | Sorghum | cytosol | 57.85 | 45.58 |
| Os06t0318300-02 | Rice | cytosol | 53.36 | 44.07 |
| Os02t0719000-01 | Rice | cytosol | 56.5 | 33.42 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | EntrezGene:837759 | UniProt:A0A178W8J7 | ProteinID:AAC17610.1 | ProteinID:AEE28833.1 |
| ArrayExpress:AT1G12070 | EnsemblPlantsGene:AT1G12070 | RefSeq:AT1G12070 | TAIR:AT1G12070 | RefSeq:AT1G12070-TAIR-G | EnsemblPlants:AT1G12070.1 |
| TAIR:AT1G12070.1 | EMBL:AY129007 | EMBL:BT025289 | GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0030234 | GO:GO:0050790 |
| InterPro:IPR024792 | InterPro:Ig_E-set | RefSeq:NP_172671.1 | UniProt:O65371 | ProteinID:OAP14091.1 | PFAM:PF02115 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | InterPro:RhoGDI_dom_sf |
| InterPro:Rho_GDI | SUPFAM:SSF81296 | UniParc:UPI00000ABF1D | SEG:seg | : | : |
Description
At1g12070 [Source:UniProtKB/TrEMBL;Acc:O65371]
Coordinates
chr1:-:4078547..4080236
Molecular Weight (calculated)
25458.0 Da
IEP (calculated)
4.524
GRAVY (calculated)
-0.747
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLNDEEMKA GESSEEPKGQ GLSRKNSHSS MCPTDDDEEE EDKKLELGPM IALKEQLEKD KDDESLRRWK EQLLGSVDLE EVGETPDPLV KILTLTIRSP
101: DREDMVLTIP ENGKPASKGP WFTLKEGSKY TLIFTFRVTN NIVSGLQYSN TVWKTGIKVY SRKEMLGTFS PQAEPYTHVM FEETAPSGLL VRGSYSVKSK
201: FVDDDNQCYL ENNYTFDIRK NWL
101: DREDMVLTIP ENGKPASKGP WFTLKEGSKY TLIFTFRVTN NIVSGLQYSN TVWKTGIKVY SRKEMLGTFS PQAEPYTHVM FEETAPSGLL VRGSYSVKSK
201: FVDDDNQCYL ENNYTFDIRK NWL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.