CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019740.1-P	Field mustard	cytosol	99.55	99.55
CDY62159	Canola	cytosol	99.55	99.55
CDY31238	Canola	cytosol	44.64	94.34
CDY15966	Canola	cytosol	90.18	90.18
CDY26538	Canola	cytosol	90.18	90.18
AT1G12070.1	Thale cress	cytosol	87.05	87.44
CDY21031	Canola	cytosol	84.82	85.2
CDY39796	Canola	cytosol	73.21	74.89
CDY19551	Canola	cytosol	74.55	74.55
CDY12949	Canola	cytosol	74.11	74.11
CDY32048	Canola	nucleus	74.11	73.78
CDY03276	Canola	cytosol	71.88	73.52
CDY08673	Canola	cytosol	73.21	73.21
CDY28012	Canola	cytosol	61.16	55.47
CDY35970	Canola	cytosol	60.71	54.84
Zm00001d051687_P001	Maize	cytosol	55.36	53.45
GSMUA_Achr9P12630_001	Banana	cytosol	54.46	51.26
Zm00001d017859_P002	Maize	cytosol	56.25	51.01
GSMUA_Achr7P20430_001	Banana	cytosol	57.14	48.85
TraesCS6A01G282400.1	Wheat	cytosol	56.7	48.66
TraesCS6B01G310800.1	Wheat	cytosol	55.8	48.64
GSMUA_Achr5P04110_001	Banana	cytosol	56.7	48.11
OQU85511	Sorghum	mitochondrion	45.09	47.42
TraesCS6D01G262900.1	Wheat	cytosol	54.46	46.74
KXG19891	Sorghum	cytosol	56.7	44.88
Os06t0318300-02	Rice	cytosol	53.12	44.07
Os02t0719000-01	Rice	cytosol	56.25	33.42

Protein Annotations

Gene3D:2.70.50.30	MapMan:27.4.4	GO:A0A078IVA6	UniProt:A0A078IVA6	EnsemblPlants:CDY53349	ProteinID:CDY53349
ProteinID:CDY53349.1	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00010486001	InterPro:IPR024792
InterPro:Ig_E-set	PFAM:PF02115	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
SUPFAM:SSF81296	UniParc:UPI0004EE2BEC	SEG:seg	:	:	:

Description

BnaA06g38240DBnaA06g38240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVA6]

Coordinates

chrLK033191:+:54357..56468

Molecular Weight (calculated)

25594.1 Da

IEP (calculated)

4.600

GRAVY (calculated)

-0.826

Length

224 amino acids

Sequence
(BLAST)

001: MGLKDENNKA EESAEDPKGQ GTLSRKNSHS SLCPTEDDEE DEDKKLELGP MIALKEQFEK DKDDESLMRW KEQLLGKVDL EEVGETPDPV VKILNLTIRS
101: PDREDMVLTV PEDGKPTSKG PWFTLKEGSK YTLVFTFRVT NNIVSGLRYS NSVWKTGIKV YGRKEMLGTF SPQAEPYTHV MFEESTPSGM LVRGSYSVKS
201: KFVDDDDKCY LENNYTFDIR KNWL

Best Arabidopsis Sequence Match ( AT1G12070.1 )
(BLAST)

001: MVLNDEEMKA GESSEEPKGQ GLSRKNSHSS MCPTDDDEEE EDKKLELGPM IALKEQLEKD KDDESLRRWK EQLLGSVDLE EVGETPDPLV KILTLTIRSP
101: DREDMVLTIP ENGKPASKGP WFTLKEGSKY TLIFTFRVTN NIVSGLQYSN TVWKTGIKVY SRKEMLGTFS PQAEPYTHVM FEETAPSGLL VRGSYSVKSK
201: FVDDDNQCYL ENNYTFDIRK NWL

Arabidopsis Description

At1g12070 [Source:UniProtKB/TrEMBL;Acc:O65371]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.