Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES06186 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | EES06186 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31238 | Canola | cytosol | 25.44 | 67.92 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 54.06 | 64.29 |
| Os06t0318300-02 | Rice | cytosol | 57.24 | 60.0 |
| Bra040037.1-P | Field mustard | cytosol | 48.06 | 59.91 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 55.12 | 59.54 |
| CDY15966 | Canola | cytosol | 46.29 | 58.48 |
| CDY08673 | Canola | cytosol | 46.29 | 58.48 |
| CDY19551 | Canola | cytosol | 45.94 | 58.04 |
| Bra026994.1-P | Field mustard | cytosol | 45.94 | 58.04 |
| CDY26538 | Canola | cytosol | 45.94 | 58.04 |
| Bra001274.1-P | Field mustard | cytosol | 43.46 | 58.02 |
| AT1G12070.1 | Thale cress | cytosol | 45.58 | 57.85 |
| Bra034515.1-P | Field mustard | nucleus | 45.94 | 57.78 |
| CDY32048 | Canola | nucleus | 45.94 | 57.78 |
| KRH14075 | Soybean | cytosol | 46.29 | 57.71 |
| CDY12949 | Canola | cytosol | 45.58 | 57.59 |
| Bra027043.1-P | Field mustard | cytosol | 45.58 | 57.59 |
| CDY03276 | Canola | cytosol | 44.52 | 57.53 |
| Bra036660.1-P | Field mustard | cytosol | 44.52 | 57.53 |
| AT1G62450.1 | Thale cress | cytosol | 45.23 | 57.4 |
| OQU85511 | Sorghum | mitochondrion | 43.11 | 57.28 |
| PGSC0003DMT400021800 | Potato | cytosol | 47.0 | 57.08 |
| CDY39796 | Canola | cytosol | 44.17 | 57.08 |
| CDY53349 | Canola | cytosol | 44.88 | 56.7 |
| CDY62159 | Canola | cytosol | 44.88 | 56.7 |
| Bra019740.1-P | Field mustard | cytosol | 44.88 | 56.7 |
| Solyc05g054110.2.1 | Tomato | cytosol | 46.64 | 56.65 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 46.29 | 56.47 |
| PGSC0003DMT400060556 | Potato | cytosol | 48.41 | 56.38 |
| AT3G07880.1 | Thale cress | cytosol | 47.7 | 56.25 |
| KRH74038 | Soybean | cytosol | 46.29 | 56.22 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 51.94 | 55.68 |
| CDY21031 | Canola | cytosol | 43.82 | 55.61 |
| Bra016793.1-P | Field mustard | cytosol | 43.82 | 55.61 |
| Solyc04g014760.2.1 | Tomato | nucleus | 47.7 | 55.56 |
| VIT_12s0059g00580.t01 | Wine grape | cytosol | 46.29 | 54.81 |
| KXG22740 | Sorghum | cytosol | 41.7 | 54.63 |
| KRH36543 | Soybean | cytosol | 47.7 | 54.44 |
| Bra029684.1-P | Field mustard | cytosol | 47.7 | 54.44 |
| CDY35970 | Canola | cytosol | 47.7 | 54.44 |
| EES18012 | Sorghum | cytosol | 41.7 | 54.38 |
| CDY28012 | Canola | cytosol | 47.35 | 54.25 |
| EES18016 | Sorghum | cytosol | 40.99 | 53.7 |
| KRH11529 | Soybean | nucleus | 47.35 | 52.55 |
| KRH51157 | Soybean | cytosol | 45.94 | 52.21 |
| KRH01997 | Soybean | cytosol | 45.94 | 52.21 |
| Solyc11g012270.1.1 | Tomato | cytosol | 47.7 | 51.92 |
| PGSC0003DMT400034743 | Potato | cytosol | 47.0 | 51.15 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | UniProt:A0A194YJW8 | GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0030234 | GO:GO:0050790 |
| InterPro:IPR024792 | InterPro:Ig_E-set | EnsemblPlants:KXG19891 | ProteinID:KXG19891 | ProteinID:KXG19891.1 | PFAM:PF02115 |
| PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | EnsemblPlantsGene:SORBI_3010G131400 |
| SUPFAM:SSF81296 | UniParc:UPI0003C66BFF | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:18059088..18062557
Molecular Weight (calculated)
31492.4 Da
IEP (calculated)
4.426
GRAVY (calculated)
-0.751
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSHGPCTAA TSSAAVGAVV TCCSAAKDEE EQRQRLQGTE KEPRRAEEEC SSAAEQEQRV EAVGRKLSEA SSLCATTNTN GEDDDDDDDE EEEAPPKDID
101: LGPRLSIKEQ LDKDKDDESL RRWKEQLLGS LDFSTVGETL EPDVKITSLS ILSPGRPDMV LPLPLPAEPK SSSKEPWFTL KEGSAYRLKF TFSVADNIVS
201: GLRYTNTVWK AGIRVDRTKE MLGTFSPQAE PYTYLTPEET TPSGIFARGS YSARTKFVDD DRKCYLEMNY AFHIRRDWPS TLT
101: LGPRLSIKEQ LDKDKDDESL RRWKEQLLGS LDFSTVGETL EPDVKITSLS ILSPGRPDMV LPLPLPAEPK SSSKEPWFTL KEGSAYRLKF TFSVADNIVS
201: GLRYTNTVWK AGIRVDRTKE MLGTFSPQAE PYTYLTPEET TPSGIFARGS YSARTKFVDD DRKCYLEMNY AFHIRRDWPS TLT
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.