Factsheet for VIT_12s0059g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14075	Soybean	cytosol	65.69	69.16
KRH74038	Soybean	cytosol	65.69	67.38
VIT_00s0187g00210.t01	Wine grape	cytosol	64.02	65.95
Zm00001d051687_P001	Maize	cytosol	59.0	60.78
Zm00001d017859_P002	Maize	cytosol	60.25	58.3
GSMUA_Achr9P12630_001	Banana	cytosol	56.9	57.14
GSMUA_Achr5P04110_001	Banana	cytosol	61.92	56.06
GSMUA_Achr7P20430_001	Banana	cytosol	60.67	55.34
TraesCS6D01G262900.1	Wheat	cytosol	60.25	55.17
TraesCS6B01G310800.1	Wheat	cytosol	59.0	54.86
TraesCS6A01G282400.1	Wheat	cytosol	59.83	54.79
VIT_05s0062g00780.t01	Wine grape	cytosol	54.81	53.04
OQU85511	Sorghum	mitochondrion	46.44	52.11
Os06t0318300-02	Rice	cytosol	56.07	49.63
KXG19891	Sorghum	cytosol	54.81	46.29
VIT_07s0005g03900.t01	Wine grape	cytosol	39.33	39.66
Os02t0719000-01	Rice	cytosol	59.41	37.67

Protein Annotations

EntrezGene:100244819	wikigene:100244819	Gene3D:2.70.50.30	MapMan:27.4.4	ProteinID:CCB51960	ProteinID:CCB51960.1
UniProt:F6HIB4	EMBL:FN595765	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792
InterPro:Ig_E-set	EntrezGene:LOC100244819	wikigene:LOC100244819	PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980
PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296	TIGR:TC60793	UniParc:UPI00019843FE
ArrayExpress:VIT_12s0059g00580	EnsemblPlantsGene:VIT_12s0059g00580	EnsemblPlants:VIT_12s0059g00580.t01	unigene:Vvi.8675	RefSeq:XP_002268608	RefSeq:XP_002268608.2
RefSeq:XP_002268608.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:5427894..5430676

Molecular Weight (calculated)

26887.4 Da

IEP (calculated)

4.377

GRAVY (calculated)

-0.672

Length

239 amino acids

Sequence
(BLAST)

001: MAVGAVGSSN NMGFDEKMEA GDKSGALETK TSETMSANQV GVDESSQNAA EEEEEEVERK IKLGPQFTLK EQLEKDKDDE SLRRWKEQLL GTVDLENVGE
101: TLEPEVRILS LSIISPGRPD IVLPIPEDGK PKGLWFSLEE GSHYKLKFSF QVSNNIVSGL RYTNTVWKTG MKVDSSKEMF GTFSPQAEPY THEMLEEITP
201: SGFFARGSYS ARSKFLDDDN KCYLEINYTF DIRKEWATP

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.