CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07880.1	EES06186	AT1G75840.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31238	Canola	cytosol	35.21	70.75
Zm00001d051687_P001	Maize	cytosol	62.91	57.76
Zm00001d017859_P002	Maize	cytosol	66.2	57.09
Bra040037.1-P	Field mustard	cytosol	55.4	51.98
TraesCS6B01G310800.1	Wheat	cytosol	62.44	51.75
TraesCS6A01G282400.1	Wheat	cytosol	62.91	51.34
GSMUA_Achr9P12630_001	Banana	cytosol	56.81	50.84
TraesCS6D01G262900.1	Wheat	cytosol	61.97	50.57
AT3G07880.1	Thale cress	cytosol	56.34	50.0
Bra001274.1-P	Field mustard	cytosol	48.83	49.06
KRH14075	Soybean	cytosol	51.64	48.46
GSMUA_Achr7P20430_001	Banana	cytosol	59.15	48.09
CDY28012	Canola	cytosol	54.93	47.37
KRH74038	Soybean	cytosol	51.17	46.78
Bra029684.1-P	Field mustard	cytosol	54.46	46.77
CDY35970	Canola	cytosol	54.46	46.77
Bra036660.1-P	Field mustard	cytosol	47.89	46.58
VIT_12s0059g00580.t01	Wine grape	cytosol	52.11	46.44
PGSC0003DMT400021800	Potato	cytosol	50.7	46.35
CDY03276	Canola	cytosol	47.42	46.12
CDY39796	Canola	cytosol	47.42	46.12
Solyc05g054110.2.1	Tomato	cytosol	50.23	45.92
AT1G62450.1	Thale cress	cytosol	47.89	45.74
Bra027043.1-P	Field mustard	cytosol	47.89	45.54
CDY19551	Canola	cytosol	47.89	45.54
CDY12949	Canola	cytosol	47.89	45.54
GSMUA_Achr5P04110_001	Banana	cytosol	56.34	45.45
VIT_00s0187g00210.t01	Wine grape	cytosol	49.3	45.26
CDY53349	Canola	cytosol	47.42	45.09
CDY62159	Canola	cytosol	47.42	45.09
Bra019740.1-P	Field mustard	cytosol	47.42	45.09
CDY32048	Canola	nucleus	47.42	44.89
Bra034515.1-P	Field mustard	nucleus	47.42	44.89
Bra016793.1-P	Field mustard	cytosol	46.95	44.84
CDY21031	Canola	cytosol	46.95	44.84
CDY08673	Canola	cytosol	46.95	44.64
PGSC0003DMT400060556	Potato	cytosol	50.7	44.44
AT1G12070.1	Thale cress	cytosol	46.48	44.39
KRH36543	Soybean	cytosol	51.64	44.35
CDY15966	Canola	cytosol	46.48	44.2
Bra026994.1-P	Field mustard	cytosol	46.48	44.2
CDY26538	Canola	cytosol	46.48	44.2
Solyc04g014760.2.1	Tomato	nucleus	49.77	43.62
KRH11529	Soybean	nucleus	51.64	43.14
KXG19891	Sorghum	cytosol	57.28	43.11
EES18016	Sorghum	cytosol	43.66	43.06
EES18012	Sorghum	cytosol	43.66	42.86
KRH01997	Soybean	cytosol	48.83	41.77
KRH51157	Soybean	cytosol	48.36	41.37
KXG22740	Sorghum	cytosol	40.85	40.28
Solyc11g012270.1.1	Tomato	cytosol	48.83	40.0
PGSC0003DMT400034743	Potato	cytosol	47.89	39.23
Os02t0719000-01	Rice	cytosol	63.38	35.81

Protein Annotations

Gene3D:2.70.50.30	MapMan:27.4.4	UniProt:A0A1Z5RPJ3	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:IPR024792	InterPro:Ig_E-set	EnsemblPlants:OQU85511	ProteinID:OQU85511	ProteinID:OQU85511.1	PFAM:PF02115
PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	EnsemblPlantsGene:SORBI_3004G259101	SUPFAM:SSF81296
UniParc:UPI000B8BAE3B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:60439416..60456664

Molecular Weight (calculated)

23680.9 Da

IEP (calculated)

10.327

GRAVY (calculated)

-0.562

Length

213 amino acids

Sequence
(BLAST)

001: MRRTPPRSST SAPWSASRSS SRRTRTTRAC GDGRSSSSAA WTSTPWEALL DIGAVPGLSS ISNSTSRSGG RPETLEPDVK IMSLSILSPG RPDIFLPLPV
101: EPKAKGVWFT LKEGSPYRLK FTFSVSNNIV SGLRYTNTVW KTGIKVDRAK EMLGTFSPQL EPYTYVTPED TTPSGMFARG SYSARTKFLD DDRKCYLEIN
201: YTFDIRREWP STS

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.