CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010398_P001	Maize	cytosol	87.04	88.68
EES18012	Sorghum	cytosol	84.72	84.33
TraesCS3D01G414900.1	Wheat	cytosol	79.63	83.9
TraesCS3B01G454500.1	Wheat	cytosol	77.31	81.46
TraesCS3A01G419200.1	Wheat	cytosol	76.85	80.98
Os01t0913600-01	Rice	plasma membrane	80.56	80.18
HORVU3Hr1G092980.2	Barley	cytosol	80.09	70.04
KXG22740	Sorghum	cytosol	68.06	68.06
GSMUA_Achr10P...	Banana	cytosol	62.5	59.73
GSMUA_Achr10P...	Banana	cytosol	64.81	57.85
GSMUA_Achr11P...	Banana	cytosol	62.96	53.75
KRH58804	Soybean	cytosol	57.41	52.54
KRH42697	Soybean	cytosol	57.41	52.1
VIT_05s0062g00780.t01	Wine grape	cytosol	56.48	49.39
KRG97381	Soybean	cytosol	53.7	47.35
KRH31533	Soybean	cytosol	53.24	47.33
PGSC0003DMT400011652	Potato	cytosol	40.28	44.85
Solyc12g098650.1.1	Tomato	cytosol	40.28	43.94
OQU85511	Sorghum	mitochondrion	43.06	43.66
KXG19891	Sorghum	cytosol	53.7	40.99

Protein Annotations

Gene3D:2.70.50.30	MapMan:27.4.4	EntrezGene:8061308	UniProt:C5YW61	EnsemblPlants:EES18016	ProteinID:EES18016
ProteinID:EES18016.1	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792	InterPro:Ig_E-set
PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF20	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
EnsemblPlantsGene:SORBI_3009G098900	SUPFAM:SSF81296	unigene:Sbi.17591	UniParc:UPI0001A88BC5	RefSeq:XP_002439586.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:37982213..37984198

Molecular Weight (calculated)

24943.9 Da

IEP (calculated)

4.354

GRAVY (calculated)

-0.838

Length

216 amino acids

Sequence
(BLAST)

001: MDDNKEKEHE HEHEHEKHDG TDIEEEEEDE EGHKRVVVLG PQVPLKEQLE LDKDDESLRR WKEQLLGQVD TEQLGETAEP EVKVLNLTIL SPGRPDLVLP
101: IPFQADDKGY AFTLKDGSLY SFRFSFTVSN NIVSGLKYTN TVWKTGVRVE NQKMMLGTFS PQLEPYVYEG EEETTPAGIF ARGSYSAKLK FFDDDGKCYL
201: ETSYYFEIRK EWPATQ

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.