Factsheet for VIT_05s0062g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G454500.1	Wheat	cytosol	49.39	59.51
TraesCS3A01G419200.1	Wheat	cytosol	48.99	59.02
Zm00001d010398_P001	Maize	cytosol	50.61	58.96
KRH58804	Soybean	cytosol	56.28	58.9
TraesCS3D01G414900.1	Wheat	cytosol	48.58	58.54
KRH42697	Soybean	cytosol	55.87	57.98
EES18016	Sorghum	cytosol	49.39	56.48
EES18012	Sorghum	cytosol	48.99	55.76
Os01t0913600-01	Rice	plasma membrane	48.99	55.76
Zm00001d038046_P003	Maize	cytosol	47.77	54.88
GSMUA_Achr10P...	Banana	cytosol	50.2	54.87
VIT_12s0059g00580.t01	Wine grape	cytosol	53.04	54.81
VIT_00s0187g00210.t01	Wine grape	cytosol	50.61	53.88
KRH31533	Soybean	cytosol	52.63	53.5
KXG22740	Sorghum	cytosol	46.56	53.24
KRG97381	Soybean	cytosol	52.63	53.06
HORVU3Hr1G092980.2	Barley	cytosol	50.2	50.2
GSMUA_Achr11P...	Banana	cytosol	50.61	49.41
GSMUA_Achr10P...	Banana	cytosol	48.18	49.17
TraesCS1A01G445800.1	Wheat	cytosol	45.34	48.07
Solyc12g098650.1.1	Tomato	cytosol	38.46	47.98
PGSC0003DMT400011652	Potato	cytosol	37.65	47.94
VIT_07s0005g03900.t01	Wine grape	cytosol	39.68	41.35
TraesCS1B01G480500.2	Wheat	cytosol, plastid	47.77	36.88
HORVU1Hr1G095170.3	Barley	cytosol, mitochondrion, nucleus	41.3	35.05
Zm00001d010397_P002	Maize	cytosol	23.89	34.91
TraesCS1D01G454500.1	Wheat	plastid	45.75	34.45

Protein Annotations

EntrezGene:100260088	wikigene:100260088	Gene3D:2.70.50.30	MapMan:27.4.4	ProteinID:CCB61800	ProteinID:CCB61800.1
UniProt:F6I4G3	EMBL:FN596745	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792
InterPro:Ig_E-set	EntrezGene:LOC100260088	wikigene:LOC100260088	PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980
PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296	TIGR:TC61283	TIGR:TC69780
UniParc:UPI00015CBE93	ArrayExpress:VIT_05s0062g00780	EnsemblPlantsGene:VIT_05s0062g00780	EnsemblPlants:VIT_05s0062g00780.t01	unigene:Vvi.5881	RefSeq:XP_002263904
RefSeq:XP_002263904.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:19076755..19078272

Molecular Weight (calculated)

28266.7 Da

IEP (calculated)

4.321

GRAVY (calculated)

-0.875

Length

247 amino acids

Sequence
(BLAST)

001: MSALVGAISK DFTFNPVMEK EENKDGEPTR ECDDSEKPDD EGREDDEDDE AEEDGKPKSE KELENKELEL GPQVSLKEQL EKDKDDESLR RWKEQLLGTV
101: DFSAVGESNE PEVRIQSLSI LCKDRPDLVF AIPLAANSKD RLFTLKEGSR YHLKFSFVVS NNIVSGLKYI HTVWKTGIKV DNTRIMLGTF SPQQEPYTYE
201: LEEETTPSGM FARGSYSARS KFIDDDRKCY LDFSYTFDIQ KNWPSAS

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.