Factsheet for PGSC0003DMT400011652

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098650.1.1	Tomato	cytosol	93.3	91.41
TraesCS3D01G414900.1	Wheat	cytosol	44.33	41.95
Zm00001d010398_P001	Maize	cytosol	44.33	40.57
TraesCS3B01G454500.1	Wheat	cytosol	42.78	40.49
EES18016	Sorghum	cytosol	44.85	40.28
GSMUA_Achr10P...	Banana	cytosol	46.91	40.27
TraesCS3A01G419200.1	Wheat	cytosol	42.27	40.0
KRH58804	Soybean	cytosol	48.45	39.83
Os01t0913600-01	Rice	plasma membrane	44.33	39.63
KRH42697	Soybean	cytosol	48.45	39.5
KXG22740	Sorghum	cytosol	43.81	39.35
EES18012	Sorghum	cytosol	43.81	39.17
Zm00001d038046_P003	Maize	cytosol	41.75	37.67
VIT_05s0062g00780.t01	Wine grape	cytosol	47.94	37.65
PGSC0003DMT400021800	Potato	cytosol	44.85	37.34
GSMUA_Achr10P...	Banana	cytosol	45.88	36.78
GSMUA_Achr11P...	Banana	cytosol	47.42	36.36
KRG97381	Soybean	cytosol	45.88	36.33
KRH31533	Soybean	cytosol	44.85	35.8
PGSC0003DMT400060556	Potato	cytosol	43.81	34.98
TraesCS1A01G445800.1	Wheat	cytosol	41.75	34.76
HORVU3Hr1G092980.2	Barley	cytosol	42.78	33.6
PGSC0003DMT400034743	Potato	cytosol	42.27	31.54
TraesCS1D01G454500.1	Wheat	plastid	43.81	25.91
TraesCS1B01G480500.2	Wheat	cytosol, plastid	42.27	25.62
HORVU1Hr1G095170.3	Barley	cytosol, mitochondrion, nucleus	38.14	25.43
Zm00001d010397_P002	Maize	cytosol	17.53	20.12

Protein Annotations

EntrezGene:102602730	Gene3D:2.70.50.30	MapMan:27.4.4	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:IPR024792	InterPro:Ig_E-set	UniProt:M0ZZX4	PFAM:PF02115	EnsemblPlantsGene:PGSC0003DMG401004581	PGSC:PGSC0003DMG401004581
EnsemblPlants:PGSC0003DMT400011652	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
SUPFAM:SSF81296	UniParc:UPI0002962F07	RefSeq:XP_006349894.1	SEG:seg	:	:

Description

Rho guanine dissociation inhibitor [Source:PGSC_GENE;Acc:PGSC0003DMG401004581]

Coordinates

chr12:+:59485946..59488581

Molecular Weight (calculated)

22723.8 Da

IEP (calculated)

4.170

GRAVY (calculated)

-0.617

Length

194 amino acids

Sequence
(BLAST)

001: MSAIVEPISP SKALIMDTMM DENNQQENMK MQDDESLREE QLLESDYSTS DEENELEPEV QEPKLYIICP ERPELVLCEP FFSTPKECLF TLKEASRYKL
101: KFSFTVSNNV VCGLKYINTT WKTGVRVDKS QVMLGTFEPR KEPYVYELEE DVTPSGVFAR GLYTTRTQVI DEKERCYVDI TYYFDIQRQW PESP

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.