Factsheet for VIT_00s0187g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07880.1	VIT_18s0001g14670.t01	AT1G75840.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36543	Soybean	cytosol	69.83	65.32
KRH51157	Soybean	cytosol	69.83	65.06
KRH11529	Soybean	nucleus	71.12	64.71
PGSC0003DMT400021800	Potato	cytosol	64.66	64.38
Bra001274.1-P	Field mustard	cytosol	58.62	64.15
VIT_12s0059g00580.t01	Wine grape	cytosol	65.95	64.02
Solyc05g054110.2.1	Tomato	cytosol	64.22	63.95
KRH01997	Soybean	cytosol	68.1	63.45
Solyc04g014760.2.1	Tomato	nucleus	65.95	62.96
PGSC0003DMT400060556	Potato	cytosol	65.52	62.55
Bra029684.1-P	Field mustard	cytosol	66.81	62.5
AT3G07880.1	Thale cress	cytosol	64.66	62.5
CDY35970	Canola	cytosol	66.81	62.5
Bra040037.1-P	Field mustard	cytosol	59.91	61.23
Zm00001d051687_P001	Maize	cytosol	60.34	60.34
CDY28012	Canola	cytosol	63.36	59.51
Zm00001d017859_P002	Maize	cytosol	62.93	59.11
Solyc11g012270.1.1	Tomato	cytosol	65.52	58.46
GSMUA_Achr9P12630_001	Banana	cytosol	59.91	58.4
PGSC0003DMT400034743	Potato	cytosol	63.79	56.92
TraesCS6B01G310800.1	Wheat	cytosol	62.07	56.03
GSMUA_Achr5P04110_001	Banana	cytosol	63.36	55.68
GSMUA_Achr7P20430_001	Banana	cytosol	62.5	55.34
TraesCS6A01G282400.1	Wheat	cytosol	61.21	54.41
TraesCS6D01G262900.1	Wheat	cytosol	60.78	54.02
Os06t0318300-02	Rice	cytosol	59.05	50.74
VIT_05s0062g00780.t01	Wine grape	cytosol	53.88	50.61
OQU85511	Sorghum	mitochondrion	45.26	49.3
KXG19891	Sorghum	cytosol	56.47	46.29
Os02t0719000-01	Rice	cytosol	64.66	39.79
VIT_07s0005g03900.t01	Wine grape	cytosol	38.79	37.97

Protein Annotations

EntrezGene:100262024	wikigene:100262024	Gene3D:2.70.50.30	MapMan:27.4.4	EMBL:AM458057	ProteinID:CAN83205
ProteinID:CAN83205.1	ProteinID:CBI33110	ProteinID:CBI33110.3	UniProt:D7TRI5	EMBL:FN596025	GO:GO:0003674
GO:GO:0005094	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792	InterPro:Ig_E-set	EntrezGene:LOC100262024	wikigene:LOC100262024
PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
SUPFAM:SSF81296	TIGR:TC54672	UniParc:UPI0001BE3CE6	ArrayExpress:VIT_00s0187g00210	EnsemblPlantsGene:VIT_00s0187g00210	EnsemblPlants:VIT_00s0187g00210.t01
unigene:Vvi.2440	RefSeq:XP_002278188	RefSeq:XP_002278188.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:9143310..9146153

Molecular Weight (calculated)

26162.2 Da

IEP (calculated)

4.256

GRAVY (calculated)

-0.872

Length

232 amino acids

Sequence
(BLAST)

001: MGFDNNEGAA NTDLSETKST AKTPADEERG DEHGGCENSV DATEEEEEED EERKIELGPQ FTLKEQLEKD KDDESLRRWK EQLLGSVDLN SVGETLEPDV
101: KILELAIKSP GRPDIVLPIP ESGNPKGLWF TLKEGSRYSM NFAFKVSNNI VSGLRCTNVV WKTGLKVDST KEMLGTFSPQ QETYTHEMPE ETTPSGIFAR
201: GTYSAKTKFL DDDNKCYLEI NYSFDIRKDW QS

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.