Factsheet for Solyc11g012270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034743	Potato	cytosol	95.0	95.0
Solyc04g014760.2.1	Tomato	nucleus	76.15	81.48
Solyc05g054110.2.1	Tomato	cytosol	65.0	72.53
Bra001274.1-P	Field mustard	cytosol	54.23	66.51
KRH51157	Soybean	cytosol	63.46	66.27
VIT_00s0187g00210.t01	Wine grape	cytosol	58.46	65.52
KRH11529	Soybean	nucleus	64.23	65.49
KRH36543	Soybean	cytosol	61.54	64.52
Bra040037.1-P	Field mustard	cytosol	56.15	64.32
KRH01997	Soybean	cytosol	61.15	63.86
AT3G07880.1	Thale cress	cytosol	58.46	63.33
CDY28012	Canola	cytosol	57.31	60.32
CDY35970	Canola	cytosol	57.31	60.08
Bra029684.1-P	Field mustard	cytosol	57.31	60.08
GSMUA_Achr9P12630_001	Banana	cytosol	53.46	58.4
GSMUA_Achr7P20430_001	Banana	cytosol	57.69	57.25
Zm00001d051687_P001	Maize	cytosol	49.62	55.6
Zm00001d017859_P002	Maize	cytosol	51.15	53.85
TraesCS6D01G262900.1	Wheat	cytosol	53.46	53.26
GSMUA_Achr5P04110_001	Banana	cytosol	53.46	52.65
TraesCS6B01G310800.1	Wheat	cytosol	50.77	51.36
TraesCS6A01G282400.1	Wheat	cytosol	51.15	50.96
Os06t0318300-02	Rice	cytosol	51.15	49.26
OQU85511	Sorghum	mitochondrion	40.0	48.83
KXG19891	Sorghum	cytosol	51.92	47.7
Solyc09g072670.2.1	Tomato	cytosol	35.77	42.27
Solyc12g098650.1.1	Tomato	cytosol	31.54	41.41
Os02t0719000-01	Rice	cytosol	55.0	37.93

Protein Annotations

Gene3D:2.70.50.30	MapMan:27.4.4	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792
InterPro:Ig_E-set	UniProt:K4D632	PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30
InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc11g012270.1	EnsemblPlants:Solyc11g012270.1.1	UniParc:UPI0002769F63

Description

No Description!

Coordinates

chr11:-:5136039..5138781

Molecular Weight (calculated)

29220.0 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.767

Length

260 amino acids

Sequence
(BLAST)

001: MSLAVRVGEN SKKMGFDDNK VEGKEGSATI CEGNKGIVAD FDPEIENGGG TDEGNRVNRQ MSESSIYTTD HEEDDDEANH KIELGPQCTL KETFEKDKDD
101: ESLRRWKEQL LGSVDINAVG ESLDPEVKIL SLAIKSPGRS DIVLPIPEDG NPKSPWFVLK EGSKYSLKFT FQVNNNIVTG LKYTNAVWKT AIKVDSTKEM
201: IGAFSPQLEP YTHEMPEETT PSGIFARGSY SARTKFLDDD NKCYLEINYT FEIKREWQEK

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.