Factsheet for Solyc05g054110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021800	Potato	cytosol	99.14	99.14
Solyc04g014760.2.1	Tomato	nucleus	77.68	74.49
Solyc11g012270.1.1	Tomato	cytosol	72.53	65.0
VIT_00s0187g00210.t01	Wine grape	cytosol	63.95	64.22
Bra040037.1-P	Field mustard	cytosol	62.23	63.88
Bra001274.1-P	Field mustard	cytosol	57.94	63.68
KRH01997	Soybean	cytosol	66.95	62.65
KRH51157	Soybean	cytosol	66.95	62.65
KRH36543	Soybean	cytosol	66.52	62.5
AT3G07880.1	Thale cress	cytosol	63.95	62.08
KRH11529	Soybean	nucleus	66.95	61.18
Bra029684.1-P	Field mustard	cytosol	63.95	60.08
CDY35970	Canola	cytosol	63.95	60.08
CDY28012	Canola	cytosol	63.52	59.92
Zm00001d051687_P001	Maize	cytosol	58.37	58.62
GSMUA_Achr9P12630_001	Banana	cytosol	58.37	57.14
Zm00001d017859_P002	Maize	cytosol	59.23	55.87
GSMUA_Achr7P20430_001	Banana	cytosol	61.8	54.96
GSMUA_Achr5P04110_001	Banana	cytosol	60.09	53.03
TraesCS6A01G282400.1	Wheat	cytosol	58.37	52.11
TraesCS6D01G262900.1	Wheat	cytosol	58.37	52.11
TraesCS6B01G310800.1	Wheat	cytosol	57.08	51.75
OQU85511	Sorghum	mitochondrion	45.92	50.23
Os06t0318300-02	Rice	cytosol	55.36	47.78
KXG19891	Sorghum	cytosol	56.65	46.64
Solyc12g098650.1.1	Tomato	cytosol	37.77	44.44
Solyc09g072670.2.1	Tomato	cytosol	39.06	41.36
Os02t0719000-01	Rice	cytosol	58.8	36.34

Protein Annotations

Gene3D:2.70.50.30	MapMan:27.4.4	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792
InterPro:Ig_E-set	UniProt:K4C290	PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30
InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc05g054110.2	EnsemblPlants:Solyc05g054110.2.1	UniParc:UPI00027668F6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:64080673..64085207

Molecular Weight (calculated)

26238.7 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.771

Length

233 amino acids

Sequence
(BLAST)

001: MHSGKEGKGG TATPIAESDS EIEHEPGEKN VSRQMSESSL YTTEDEEEDE THNKIELGPQ CTLKEQFEKD KDDESLRRWK EQLLGSVDIN AVGESLDPDV
101: KILSLEIKSP GRPDIVLPIP EGGKPQCPWF TLKEGSKYSL KFSFLVTNNI VTGLKYINTV WKTGLKVDST KQMIGAFSPQ SEPYTHEMPE DTTPSGMFAR
201: GSYSARTKFL DDDNKCYLEI NYTFDIKKEW LAT

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.