Factsheet for Zm00001d038664_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007384_P003
Zm00001d008906_P003
Zm00001d012342_P001
Zm00001d015036_P005
Zm00001d018004_P002
Zm00001d024153_P001
Zm00001d025835_P001
Zm00001d025836_P001
Zm00001d028803_P002
Zm00001d029004_P004
Zm00001d032131_P001
Zm00001d035534_P003
Zm00001d035539_P001
Zm00001d038664_P001
Zm00001d042645_P001
Zm00001d044802_P001
Zm00001d046856_P002
Zm00001d047540_P001
Zm00001d047701_P002
Zm00001d052273_P004
Zm00001d053899_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16340.1	Zm00001d015036_P005	AT1G20090.1	17267444
AT4G16340.1	Zm00001d053899_P001	AT1G20090.1	17267444
AT4G16340.1	Zm00001d008906_P003	AT1G29170.1	17267444
AT4G16340.1	Zm00001d025835_P001	AT1G29170.1	17267444
AT4G16340.1	Zm00001d025836_P001	AT1G29170.1	17267444
AT4G16340.1	Zm00001d032131_P001	AT1G29170.1	17267444
AT4G16340.1	Zm00001d028803_P002	AT2G38440.1	17267444
AT4G16340.1	Zm00001d047701_P002	AT2G38440.1	17267444
AT4G16340.1	Zm00001d007384_P003	AT4G16340.1	17267444
AT4G16340.1	Zm00001d012342_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d024153_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d029004_P004	AT4G16340.1	17267444
AT4G16340.1	Zm00001d035534_P003	AT4G16340.1	17267444
AT4G16340.1	Zm00001d035539_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d038664_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d042645_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d046856_P002	AT4G16340.1	17267444
AT4G16340.1	Zm00001d047540_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d028803_P002	AT5G01730.1	17267444
AT4G16340.1	Zm00001d047701_P002	AT5G01730.1	17267444
AT4G16340.1	Zm00001d018004_P002	AT5G62880.1	17267444
AT4G16340.1	Zm00001d044802_P001	AT5G62880.1	17267444
AT4G16340.1	Zm00001d052273_P004	AT5G62880.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035534_P003	Maize	cytosol	56.64	64.06
Zm00001d046856_P002	Maize	endoplasmic reticulum, nucleus, peroxisome	63.55	63.79
Zm00001d007384_P003	Maize	cytosol, endoplasmic reticulum, peroxisome	39.44	58.94
Zm00001d035539_P001	Maize	cytosol	15.89	41.46
Zm00001d024153_P001	Maize	cytosol	5.98	21.05
Solyc08g016070.1.1	Tomato	mitochondrion	15.89	13.84
Zm00001d012342_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.79	13.36
Zm00001d042645_P001	Maize	cytosol, nucleus, peroxisome	14.39	13.12
Zm00001d047540_P001	Maize	cytosol, mitochondrion	29.91	8.67
Zm00001d029004_P004	Maize	cytosol	28.6	8.2
AT4G16340.1	Thale cress	cytosol	25.05	7.32
CDY32235	Canola	cytosol	24.67	7.24
VIT_11s0016g00100.t01	Wine grape	mitochondrion	24.3	7.04
TraesCS5D01G127700.1	Wheat	cytosol	1.87	6.99
CDY34451	Canola	endoplasmic reticulum	24.11	6.83
KRH43411	Soybean	endoplasmic reticulum	23.36	6.81
KRH13046	Soybean	endoplasmic reticulum	22.99	6.7
TraesCS5A01G195400.1	Wheat	cytosol	1.68	6.62
Bra038448.1-P	Field mustard	cytosol	25.23	6.52
Solyc08g016060.1.1	Tomato	extracellular	2.99	5.61
Solyc08g016050.2.1	Tomato	nucleus	5.42	3.2

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	Gene3D:2.130.10.10	Gene3D:3.30.230.70	UniProt:A0A1D6M7Z1
ProteinID:AQK87140.1	ncoils:Coil	InterPro:E2F	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0004518	GO:GO:0004527	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR027408	InterPro:IPR036388	PFAM:PF02319	InterPro:PNPase/RNase_PH_dom_sf	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00320	SMART:SM01372	SUPFAM:SSF46785
SUPFAM:SSF50978	SUPFAM:SSF54211	UniParc:UPI000843A347	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d038664	EnsemblPlants:Zm00001d038664_P001	EnsemblPlants:Zm00001d038664_T001
SEG:seg	:	:	:	:	:

Description

E2F-DP-transcription factor 214Exosome complex exonuclease RRP46 homolog

Coordinates

chr6:+:162201437..162205584

Molecular Weight (calculated)

59216.8 Da

IEP (calculated)

8.311

GRAVY (calculated)

-0.346

Length

535 amino acids

Sequence
(BLAST)

001: MMEGGSRADG QNPNQLRLFT CIGNLLHRAH GCTRWAQGGI VMLSAVYGPK PGTVRGRTPE KASIEAVWKP RTGQIDTPLF PSSSFCPTAV RVIGSLKWRV
101: VFAGRQEREY EMTLKRMLQS ICLLTVHANT TTSVVLQAQG SLDRRDVFSL DTHSPSVCLL IQLEKAATEE GGVTPSVYSH KEPVHLAEKE KQKLQVWSRI
201: MPCKESFAWA MIPLFEGNHA GGLSDAAHKY YISNLFQSIT RYHLHVTPYL ALILTRTFLL QLKRKHNDRT ENEAAESNDW MSPGYANAGS SPVPTPPSGK
301: GLKASTKPKA TKGQKSGPET PLGFGSPGNL STPVGGCRYD SSLGLLTKFL NLLKGAPGGI VDLNNAAETL EVQKRRIYDI TNVLEGIGLI EKKLKNNIRW
401: KGVDDSRPEE VSDDMSILQA DIDALTLQER NLDERIRLDT SWRFDPAEIP TTIGGLVATV SDNVVSILDV ERQAFARRFE SHTKGVDSVC WDPTGEYVVS
501: VSEDTMKVWS LNDESFVNEL SCGGRKLSRY YMFQM

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.