Factsheet for Bra016477.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006457.1-P
Bra038448.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	Bra038448.1-P	AT4G16340.1	17267444
AT1G20090.1	Bra006457.1-P	AT5G18410.1	15294869

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62937	Canola	cytosol	100.0	100.0
CDY54338	Canola	cytosol	100.0	99.49
AT1G20090.1	Thale cress	cytosol	98.98	99.49
Bra012210.1-P	Field mustard	cytosol	98.47	97.97
Bra008227.1-P	Field mustard	cytosol	97.96	97.96
Bra003739.1-P	Field mustard	cytosol	96.43	96.92
Bra015807.1-P	Field mustard	cytosol	95.41	95.41
VIT_18s0001g14670.t01	Wine grape	cytosol	92.86	92.39
KRH51687	Soybean	cytosol, nucleus, plastid	92.35	91.88
KRH61026	Soybean	cytosol, nucleus, plastid	91.33	90.86
KRH61024	Soybean	cytosol	90.82	90.82
TraesCS6D01G068500.2	Wheat	cytosol	89.8	89.34
TraesCS6B01G094700.2	Wheat	cytosol	89.8	89.34
TraesCS6A01G070700.2	Wheat	cytosol	89.8	89.34
Bra040869.1-P	Field mustard	cytosol	79.59	89.14
Zm00001d015036_P005	Maize	cytosol	89.29	88.83
EES06186	Sorghum	cytosol	89.29	88.83
Os02t0120800-01	Rice	plasma membrane	89.29	88.83
Bra017740.1-P	Field mustard	cytosol	87.76	87.31
Bra038892.1-P	Field mustard	cytosol, plastid	87.76	87.31
Bra011651.1-P	Field mustard	cytosol	87.76	87.31
Bra002093.1-P	Field mustard	cytosol	87.76	87.31
Bra036819.1-P	Field mustard	cytosol, plastid	87.24	86.8
Bra012858.1-P	Field mustard	cytosol, plastid	87.24	86.8
Bra011578.1-P	Field mustard	cytosol	87.24	86.36
Bra037248.1-P	Field mustard	cytosol	86.73	86.29
Bra001994.1-P	Field mustard	cytosol, nucleus, plastid	86.73	85.43
Bra025045.1-P	Field mustard	cytosol	82.65	80.6
Bra022004.1-P	Field mustard	cytosol	81.63	79.6
Bra035878.1-P	Field mustard	cytosol	79.08	75.61
Bra004857.1-P	Field mustard	plastid	80.1	74.41
Bra013050.1-P	Field mustard	cytosol	58.67	73.72
Bra010128.1-P	Field mustard	cytosol	78.06	73.56
Bra011072.1-P	Field mustard	cytosol	77.55	72.73
Zm00001d053899_P001	Maize	cytosol	85.2	71.98
Bra029240.1-P	Field mustard	cytosol	78.57	71.63
Bra013051.1-P	Field mustard	cytosol	67.35	68.04
HORVU6Hr1G012690.3	Barley	plastid	90.31	62.54

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra016477	EnsemblPlants:Bra016477.1	EnsemblPlants:Bra016477.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	UniProt:M4DJ00	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF249	SMART:SM00173
SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho
TIGRFAMs:TIGR00231	UniParc:UPI0002546B73	SEG:seg	:	:	:

Description

AT1G20090 (E=2e-100) ARAC4, ROP2, ATROP2, ATRAC4 | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding

Coordinates

chrA08:-:18649662..18650768

Molecular Weight (calculated)

21724.3 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.142

Length

196 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENIAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSAVYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKNK NRCAFL

Best Arabidopsis Sequence Match ( AT1G20090.1 )
(BLAST)

001: MASRFIKCVT VGDGAVGKTC MLISYTSNTF PTDYVPTVFD NFSANVVVDG NTVNLGLWDT AGQEDYNRLR PLSYRGADVF ILAFSLISKA SYENIAKKWI
101: PELRHYAPGV PIILVGTKLD LRDDKQFFID HPGAVPITTN QGEELKKLIG SAVYIECSSK TQQNVKAVFD AAIKVVLQPP KQKKKKKNKN RCAFL

Arabidopsis Description

ARAC4RAC-like GTP-binding protein ARAC4 [Source:UniProtKB/TrEMBL;Acc:Q0WU07]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.