Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005368.1-P | |
| Bra012210.1-P | |
| Bra016477.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70816 | Canola | cytosol | 99.29 | 98.44 |
| CDY51228 | Canola | cytosol | 99.61 | 97.99 |
| AT5G18410.1 | Thale cress | cytosol | 97.64 | 96.88 |
| Solyc11g013290.1.1 | Tomato | cytosol | 24.35 | 87.57 |
| KRG97079 | Soybean | nucleus | 83.27 | 83.01 |
| KRH68821 | Soybean | nucleus | 83.27 | 83.01 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 81.7 | 82.47 |
| Solyc11g013280.1.1 | Tomato | cytosol | 55.93 | 77.81 |
| Os03t0143800-01 | Rice | cytosol | 73.84 | 73.09 |
| OQU93249 | Sorghum | cytosol | 73.29 | 72.61 |
| Zm00001d027633_P011 | Maize | mitochondrion | 59.15 | 72.33 |
| TraesCS4D01G306200.4 | Wheat | plastid | 73.21 | 72.19 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 73.13 | 72.11 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 73.13 | 72.11 |
| HORVU4Hr1G078840.3 | Barley | plastid | 73.13 | 68.16 |
| GSMUA_Achr4P00570_001 | Banana | endoplasmic reticulum, plasma membrane | 38.33 | 66.58 |
| Os03t0143900-00 | Rice | extracellular | 4.16 | 19.27 |
Protein Annotations
| EnsemblPlants:Bra006457.1 | EnsemblPlants:Bra006457.1-P | EnsemblPlantsGene:Bra006457 | InterPro:Cytoplasmic_FMR1-int | InterPro:DUF1394 | PANTHER:PTHR12195 |
| PANTHER:PTHR12195:SF0 | PFAM:PF05994 | PFAM:PF07159 | PIRSF:PIRSF008153 | PRINTS:PR01698 | SEG:seg |
| UniParc:UPI000253FE64 | UniProt:M4CQG8 | MapMan:20.2.2.2.1 | : | : | : |
Description
AT5G18410 (E=0.0) PIR, KLK, PIR121, SRA1, PIRP | PIR121; transcription activator
Coordinates
chrA03:-:3569925..3576779
Molecular Weight (calculated)
144222.0 Da
IEP (calculated)
5.676
GRAVY (calculated)
-0.086
Length
1273 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQAW LIFLSTRWAI LLNLHVEMFR VNNVEDILQV LIVFIVESLE LDFALLFPER YILLRVLPVL VVLATPSEKD TEALYKRVKL NRMINIFKND
0301: PVIPAFPDLH LSPAAILKEL SVYFQKFSSQ TRLLTLPAPH ELPPLNHIGA LRAEHDDFTI RFASSMNQLL LLKSNDGAYT EWCREVKGNM YDMVVEGFQL
0401: LSRWTARIWE QSAWKFSRPC RDAAETQEAS GSYSDYEKVV RYNYTAEERR ALVELVGYIK SVGSMLQRCD TLVADALWET IHAEVQDFVQ NTLATMLRTT
0501: FRKKKDLSRI LSDMRTLSAD WMANTRPEHE MPSSQHGGDE SKANFFYPRP VAPTAAQVHC LQFLIYEVVS GGNLRRPGGF FGNNGSEIPV NDLKQLETFF
0601: YKLSFFLHIL DYSASIGILT DLGFLWFREF YLESSRVIQF PIECSLPWML IDHILEAPNS GLLESVLLPF DIYNDSAQQA LVVLRQRFLY DEIEAEVDHG
0701: FDIFVSRLSE SIFTYYKSWS ASELLDPSFL FALDNGEKFS IQPVRFTALF KMTKVKILGR TINLRSLIAQ RMNKTFRENL EFLFDRFESQ DLCAVVELEK
0801: LIDILKHSHE LLSQDLTIDP FSLMLNEMQE NISLVSFSSR LATQIWSEMQ SDFLPNFILC NTTQRFVRSS KVPPTQKPSV PSAKPSFYCG TQDLNAAHQS
0901: FARLHSGFFG IPHLFSIVKL LGSRSLPWLI RALLDHISNK ITTLEPMISG LQEALPKSIG LLSFDGGVAG CMRLIREQLN WGTKAELKTE VLRGIKEIGS
1001: VIYTMGLLDI VLREVDTKRF MQTAPWLGLI PGAEGQIVNA QEGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG GSVLEYTLAF
1101: TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITVPQSA QQEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE VETVSASHTH
1201: RNPQVLQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFESLPQKG TVG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQAW LIFLSTRWAI LLNLHVEMFR VNNVEDILQV LIVFIVESLE LDFALLFPER YILLRVLPVL VVLATPSEKD TEALYKRVKL NRMINIFKND
0301: PVIPAFPDLH LSPAAILKEL SVYFQKFSSQ TRLLTLPAPH ELPPLNHIGA LRAEHDDFTI RFASSMNQLL LLKSNDGAYT EWCREVKGNM YDMVVEGFQL
0401: LSRWTARIWE QSAWKFSRPC RDAAETQEAS GSYSDYEKVV RYNYTAEERR ALVELVGYIK SVGSMLQRCD TLVADALWET IHAEVQDFVQ NTLATMLRTT
0501: FRKKKDLSRI LSDMRTLSAD WMANTRPEHE MPSSQHGGDE SKANFFYPRP VAPTAAQVHC LQFLIYEVVS GGNLRRPGGF FGNNGSEIPV NDLKQLETFF
0601: YKLSFFLHIL DYSASIGILT DLGFLWFREF YLESSRVIQF PIECSLPWML IDHILEAPNS GLLESVLLPF DIYNDSAQQA LVVLRQRFLY DEIEAEVDHG
0701: FDIFVSRLSE SIFTYYKSWS ASELLDPSFL FALDNGEKFS IQPVRFTALF KMTKVKILGR TINLRSLIAQ RMNKTFRENL EFLFDRFESQ DLCAVVELEK
0801: LIDILKHSHE LLSQDLTIDP FSLMLNEMQE NISLVSFSSR LATQIWSEMQ SDFLPNFILC NTTQRFVRSS KVPPTQKPSV PSAKPSFYCG TQDLNAAHQS
0901: FARLHSGFFG IPHLFSIVKL LGSRSLPWLI RALLDHISNK ITTLEPMISG LQEALPKSIG LLSFDGGVAG CMRLIREQLN WGTKAELKTE VLRGIKEIGS
1001: VIYTMGLLDI VLREVDTKRF MQTAPWLGLI PGAEGQIVNA QEGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG GSVLEYTLAF
1101: TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITVPQSA QQEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE VETVSASHTH
1201: RNPQVLQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFESLPQKG TVG
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.