Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18410.1 | GSMUA_Achr10P... | AT2G35110.1 | 15294869 |
| AT5G18410.1 | GSMUA_Achr10P... | AT2G35110.1 | 15296760 |
| AT5G18410.1 | GSMUA_Achr10P... | AT2G35110.1 | 17267444 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74900 | Soybean | plastid | 5.32 | 57.35 |
| Solyc11g013280.1.1 | Tomato | cytosol | 62.89 | 50.38 |
| AT5G18410.1 | Thale cress | cytosol | 67.8 | 38.74 |
| Bra006457.1-P | Field mustard | cytosol | 66.58 | 38.33 |
| CDX70816 | Canola | cytosol | 66.98 | 38.24 |
| CDY51228 | Canola | cytosol | 67.26 | 38.1 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 64.12 | 37.27 |
| GSMUA_Achr4P00560_001 | Banana | cytosol | 1.77 | 3.32 |
| GSMUA_Achr4P00580_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 1.23 | 3.27 |
| Solyc11g013290.1.1 | Tomato | cytosol | 1.36 | 2.82 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P00570_001 | EnsemblPlants:GSMUA_Achr4T00570_001 | EnsemblPlantsGene:GSMUA_Achr4G00570_001 | InterPro:Cytoplasmic_FMR1-int | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 |
| PFAM:PF05994 | PIRSF:PIRSF008153 | PRINTS:PR01698 | SEG:seg | UniParc:UPI0002956152 | UniProt:M0SJX4 |
| MapMan:20.2.2.2.1 | : | : | : | : | : |
Description
Protein PIR [Source:GMGC_GENE;Acc:GSMUA_Achr4G00570_001]
Coordinates
chr4:+:448627..468550
Molecular Weight (calculated)
84148.3 Da
IEP (calculated)
5.960
GRAVY (calculated)
-0.012
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLKVVLDFD FLFVHLILNW STYQRHYLIV NHIGTIRAEH DDFSIRFVSA LNQIVVLKST DGADTEWSRE VKGNMYDLVV EGCQLLSRWT GRIWEQCAWK
101: FSRPCKEPAA VGAHQSSTTF FDYEKVVRWN YTADERKTLL ELVGYIKSIG LMMEHCDTLV ADALWETIHA EVQDFVQDRL DTMLRTTFRK KKDLSRLLSD
201: MRTLSADWMA NTSKAEPELH SSHQENEETK QSAFYPRPVA PTAAQVHCLQ FLICELVSGG NLRKPGGLFG NSGSGISVED LKQLETFFYK LRFFLHIIDY
301: KATICTLTDL GFLWFREFYL ESSRVIQFPI DCSLPWMLVD HVIESQDAGL FESILMPFDI YNDSAQHALT VLKQRFLYDE IEAEVDLCFD QLVNKLHEII
401: FSHYKSFAAS VLLDQSFLSA CDDAYNCSTK PMRFNKIFKL RRIKVLGRTI NLRSLITQRM NRLFRENIDF LFDHFESQDI CAVVELQKLL DVLKLTHQFL
501: CQDLELDSFT MMLNEIQENL SLVSFSSRLS SQIWAEMQND FLPNFILCNT TQRFIRSAKG PCQAHEKETV PSGKPYLYCG SQDLNLAYQN LTSLYSEFFG
601: IPHMFAIAQL LGPRSVPWIV RALLDHISSK ITTIVPRITG LQEALPKSIG LLSFDGGVAG CQKFIHEQLT WGAKSELKIE VLHGLKEIGS ALYWLSLLDT
701: VLVGTVTFFS KALLYFNADF SGLLDNEIST TWS
101: FSRPCKEPAA VGAHQSSTTF FDYEKVVRWN YTADERKTLL ELVGYIKSIG LMMEHCDTLV ADALWETIHA EVQDFVQDRL DTMLRTTFRK KKDLSRLLSD
201: MRTLSADWMA NTSKAEPELH SSHQENEETK QSAFYPRPVA PTAAQVHCLQ FLICELVSGG NLRKPGGLFG NSGSGISVED LKQLETFFYK LRFFLHIIDY
301: KATICTLTDL GFLWFREFYL ESSRVIQFPI DCSLPWMLVD HVIESQDAGL FESILMPFDI YNDSAQHALT VLKQRFLYDE IEAEVDLCFD QLVNKLHEII
401: FSHYKSFAAS VLLDQSFLSA CDDAYNCSTK PMRFNKIFKL RRIKVLGRTI NLRSLITQRM NRLFRENIDF LFDHFESQDI CAVVELQKLL DVLKLTHQFL
501: CQDLELDSFT MMLNEIQENL SLVSFSSRLS SQIWAEMQND FLPNFILCNT TQRFIRSAKG PCQAHEKETV PSGKPYLYCG SQDLNLAYQN LTSLYSEFFG
601: IPHMFAIAQL LGPRSVPWIV RALLDHISSK ITTIVPRITG LQEALPKSIG LLSFDGGVAG CQKFIHEQLT WGAKSELKIE VLHGLKEIGS ALYWLSLLDT
701: VLVGTVTFFS KALLYFNADF SGLLDNEIST TWS
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVRQIVK I
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVRQIVK I
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.