Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g068720.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18410.1 | Solyc02g068720.2.1 | AT2G35110.1 | 15294869 |
| AT5G18410.1 | Solyc02g068720.2.1 | AT2G35110.1 | 15296760 |
| AT5G18410.1 | Solyc02g068720.2.1 | AT2G35110.1 | 17267444 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74900 | Soybean | plastid | 4.92 | 66.18 |
| GSMUA_Achr4P00570_001 | Banana | endoplasmic reticulum, plasma membrane | 50.38 | 62.89 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 83.06 | 60.27 |
| KRH68821 | Soybean | nucleus | 80.44 | 57.64 |
| KRG97079 | Soybean | nucleus | 80.22 | 57.48 |
| Bra006457.1-P | Field mustard | cytosol | 77.81 | 55.93 |
| CDX70816 | Canola | cytosol | 77.6 | 55.3 |
| AT5G18410.1 | Thale cress | cytosol | 77.27 | 55.11 |
| CDY51228 | Canola | cytosol | 77.81 | 55.02 |
| Os03t0143800-01 | Rice | cytosol | 69.62 | 49.53 |
| OQU93249 | Sorghum | cytosol | 69.51 | 49.49 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 68.96 | 48.88 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 68.96 | 48.88 |
| TraesCS4D01G306200.4 | Wheat | plastid | 68.96 | 48.88 |
| HORVU4Hr1G078840.3 | Barley | plastid | 68.85 | 46.12 |
| Zm00001d027633_P011 | Maize | mitochondrion | 49.18 | 43.23 |
| Os03t0143900-00 | Rice | extracellular | 4.81 | 16.0 |
| Solyc11g013290.1.1 | Tomato | cytosol | 0.33 | 0.85 |
Protein Annotations
| EnsemblPlants:Solyc11g013280.1.1 | EnsemblPlantsGene:Solyc11g013280.1 | InterPro:Cytoplasmic_FMR1-int | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 | PFAM:PF05994 |
| PIRSF:PIRSF008153 | PRINTS:PR01698 | SEG:seg | UniParc:UPI000276A432 | UniProt:K4D6D2 | MapMan:20.2.2.2.1 |
Description
No Description!
Coordinates
chr11:-:6186161..6211407
Molecular Weight (calculated)
103529.0 Da
IEP (calculated)
5.401
GRAVY (calculated)
-0.016
Length
915 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGFGLVLLK SIDGVDVEWV KEVKGNTYDM VVEGFQLLSR WTARVWEQCA WKFSRPCKDP VPMESHDMPA SFSDYEKVVR YNYNAEERKA LVELVSYIKS
101: IGSMMQKVDT SVTDALWETI HAEVQDFVQN TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANASKPETE MQSYPHSGEE SRGTLFYPRP VAPTSAQVHC
201: LQFLIYEVVS GGNMRKPGGI FGNSGSEIPI NDLKQLETFF YKLGFFLHVL DYTATLGTLT DLGFLWFREF YLESSRVIQF PIECSLPWML VDHVIESPII
301: GLLESALMSF DIYNDAAQQA LVILKQRFLY DEIEAEVDNC FDIFVLKLCE TIFTYYKSWA ASELLDPSFL FAIDIGEKFA VQPMRFVALL KTTRVKLLGR
401: TINLRSLIAD RMNKMFRDNL EFLFDRFESQ DLCAIVELEM LLDILQLTHE LLSKDLTIDS FNLMLNEMQE NVSLVSYSSR LASQIWTEMQ NDFLPNFILC
501: NTTQRFVRSA RVPPVPVQKP SVPYAKPNFY CGTPDLNSAY QSFARLYCGF FGVPHMFSLV KLLGSRSLPW LIRALLDNIS NKITTVEPMI TGLQEALPKS
601: IGLLPFDGGI SGCMRLAKEH LSCWHSKSEL KAEVLCGIKE IGSILYWMGL LDIVLREVDT RQFMQTAPWL GLIPGADGQI LHSQEGGDSP MVTLFKSATT
701: ATMSNPNCTN PTSFHTISRQ AEAADLLYKA NINTGSVLEY ALAFTSAALD KYCSKWSAAP KTGFIDITTS KDFYRIFSGL QIEYLEESIQ LQSNTYEMLG
801: DSVAWGGCTI IYLLGQQLHF ELFDFSHQVL NVAEVESVAI SPTQKNPNFL QGIEGLLEAM KKARRLNNHV FSMLKARCPL EDKQACAIKQ SGAPLHRIKF
901: ENTVSAFETL PQKGA
101: IGSMMQKVDT SVTDALWETI HAEVQDFVQN TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANASKPETE MQSYPHSGEE SRGTLFYPRP VAPTSAQVHC
201: LQFLIYEVVS GGNMRKPGGI FGNSGSEIPI NDLKQLETFF YKLGFFLHVL DYTATLGTLT DLGFLWFREF YLESSRVIQF PIECSLPWML VDHVIESPII
301: GLLESALMSF DIYNDAAQQA LVILKQRFLY DEIEAEVDNC FDIFVLKLCE TIFTYYKSWA ASELLDPSFL FAIDIGEKFA VQPMRFVALL KTTRVKLLGR
401: TINLRSLIAD RMNKMFRDNL EFLFDRFESQ DLCAIVELEM LLDILQLTHE LLSKDLTIDS FNLMLNEMQE NVSLVSYSSR LASQIWTEMQ NDFLPNFILC
501: NTTQRFVRSA RVPPVPVQKP SVPYAKPNFY CGTPDLNSAY QSFARLYCGF FGVPHMFSLV KLLGSRSLPW LIRALLDNIS NKITTVEPMI TGLQEALPKS
601: IGLLPFDGGI SGCMRLAKEH LSCWHSKSEL KAEVLCGIKE IGSILYWMGL LDIVLREVDT RQFMQTAPWL GLIPGADGQI LHSQEGGDSP MVTLFKSATT
701: ATMSNPNCTN PTSFHTISRQ AEAADLLYKA NINTGSVLEY ALAFTSAALD KYCSKWSAAP KTGFIDITTS KDFYRIFSGL QIEYLEESIQ LQSNTYEMLG
801: DSVAWGGCTI IYLLGQQLHF ELFDFSHQVL NVAEVESVAI SPTQKNPNFL QGIEGLLEAM KKARRLNNHV FSMLKARCPL EDKQACAIKQ SGAPLHRIKF
901: ENTVSAFETL PQKGA
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.