Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G306200.4 | Wheat | plastid | 99.38 | 99.38 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 99.07 | 99.07 |
| Os03t0143800-01 | Rice | cytosol | 94.42 | 94.79 |
| OQU93249 | Sorghum | cytosol | 93.65 | 94.09 |
| HORVU4Hr1G078840.3 | Barley | plastid | 98.84 | 93.41 |
| Zm00001d027633_P011 | Maize | mitochondrion | 74.13 | 91.93 |
| Solyc11g013290.1.1 | Tomato | cytosol | 23.63 | 86.16 |
| CDX70818 | Canola | cytosol | 6.74 | 82.86 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 72.35 | 74.07 |
| AT5G18410.1 | Thale cress | cytosol | 72.81 | 73.27 |
| Bra006457.1-P | Field mustard | cytosol | 72.11 | 73.13 |
| CDX70816 | Canola | cytosol | 72.19 | 72.59 |
| CDY51228 | Canola | cytosol | 72.5 | 72.33 |
| Solyc11g013280.1.1 | Tomato | cytosol | 48.88 | 68.96 |
| GSMUA_Achr4P00580_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 14.25 | 66.91 |
| KRH33588 | Soybean | cytosol | 5.19 | 57.27 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G408900.2 | EnsemblPlantsGene:TraesCS4A01G408900 | InterPro:Cytoplasmic_FMR1-int | InterPro:DUF1394 | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 |
| PFAM:PF05994 | PFAM:PF07159 | PIRSF:PIRSF008153 | PRINTS:PR01698 | SEG:seg | MapMan:20.2.2.2.1 |
Description
No Description!
Coordinates
chr4A:-:681662107..681680744
Molecular Weight (calculated)
147266.0 Da
IEP (calculated)
5.628
GRAVY (calculated)
-0.126
Length
1291 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAIPVEEAIA ALSTFSLEDE QPDVQGLAVL LSSERYATNS PIEYSDVAAY RLSLGEDTKA INQLNTLIQE GKEMASLLYT YRSCVKALPQ LPDSMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERLVNGPTV THFWSMLKLL DVLLQLDHLK NAKASIPNDF SWYKRTFTQV STQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHAEMFRTNT VEDILQVLIV FCVESLELDF ALLFPERHTL LRVLPVLVVL ATSSEKESES LYKRVKINRL LNIFKNDPVI
0301: PAFPDLHLSP AAMLKELSSY FQNFSSQIRL LTLPAPHEIP PRELQDYQRH YLILNHMGTI RAEHDDFSIR FASAMNQMIT LKSSDGADND WSRDIKGNMY
0401: DTVVEGFQLL SRWTGRIWEQ CAWKFSRPCK EPPISDSQQD SATFFDYEKV VRWNYTAEER RALLELIGYI KSIGLMMQHC DTLVSEALWE TIHMEVQDFV
0501: QDKLDTMLRT SFRKKKDLSR ILSDMRTLSA DWMANTSKAD PEQHSLHQET EEMRQSTFYP RPVAPTAAQI HCLQFLICEL VSGGNLRKPG GLFGNSSSGI
0601: PVEDLKQLET FFYKLSFFLH ILDFTATIGT LTDLGFLWFR EFYLESSRVI QFPIECSLPW MLVDHVIESQ DAGLLESILI PLDLYNDSAQ HALTYLKQRF
0701: LYDEIEAEVD LSFDLLVQKL NEVIFTYYKS CAASTLLDSS FTYACDDGEK YFVKPLRFDA IFKLRRVMIL GRTIDLRSLI TQRMNKLFRE NIDFLLERFE
0801: YGDLCGVVEL QQLLDILELT HQSISRFLEL DSYSLMISEM QENLSLVSYS SRISSQIWNE MQTDFLPNFI LCNTTQRFVR SLKGAHHSSQ RSDASTGKPY
0901: FYCGSHDLTM AYQGLAGLYR DFFGIPHMFA VVKLLGSRSL PGIIRALLDH ISSKITAMVP KVTGLQEALP KSIGLLSFDG GISGCQKIIH EILTWEAKLD
1001: VKVEVLHDLK EIGSALYWMS LLDIVLRQID TTQFMQSAPW LGLVPGNDGQ VKHAYSDNTP FTTLLSAATS AVASSPACAN PSSYFVMSKQ AEAASLLYKS
1101: NLNSGSVLEY ALAFTSAALD RHYSKWSATP KTGFIDITTS KDFYRVFSGL QYSYLEDSMT NPSKKREMLG DSVAWAGCTI MYLLGQQLHF ELFDFSYQFL
1201: NVAEIETATV SLYQPADRSK SPNIFQGYEV ILEAMRKARR LNNHVFSMLR ARCPLEDKVA CAIKPSGAPL HRMKFGNTVS AFETLPQRAN S
0101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERLVNGPTV THFWSMLKLL DVLLQLDHLK NAKASIPNDF SWYKRTFTQV STQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHAEMFRTNT VEDILQVLIV FCVESLELDF ALLFPERHTL LRVLPVLVVL ATSSEKESES LYKRVKINRL LNIFKNDPVI
0301: PAFPDLHLSP AAMLKELSSY FQNFSSQIRL LTLPAPHEIP PRELQDYQRH YLILNHMGTI RAEHDDFSIR FASAMNQMIT LKSSDGADND WSRDIKGNMY
0401: DTVVEGFQLL SRWTGRIWEQ CAWKFSRPCK EPPISDSQQD SATFFDYEKV VRWNYTAEER RALLELIGYI KSIGLMMQHC DTLVSEALWE TIHMEVQDFV
0501: QDKLDTMLRT SFRKKKDLSR ILSDMRTLSA DWMANTSKAD PEQHSLHQET EEMRQSTFYP RPVAPTAAQI HCLQFLICEL VSGGNLRKPG GLFGNSSSGI
0601: PVEDLKQLET FFYKLSFFLH ILDFTATIGT LTDLGFLWFR EFYLESSRVI QFPIECSLPW MLVDHVIESQ DAGLLESILI PLDLYNDSAQ HALTYLKQRF
0701: LYDEIEAEVD LSFDLLVQKL NEVIFTYYKS CAASTLLDSS FTYACDDGEK YFVKPLRFDA IFKLRRVMIL GRTIDLRSLI TQRMNKLFRE NIDFLLERFE
0801: YGDLCGVVEL QQLLDILELT HQSISRFLEL DSYSLMISEM QENLSLVSYS SRISSQIWNE MQTDFLPNFI LCNTTQRFVR SLKGAHHSSQ RSDASTGKPY
0901: FYCGSHDLTM AYQGLAGLYR DFFGIPHMFA VVKLLGSRSL PGIIRALLDH ISSKITAMVP KVTGLQEALP KSIGLLSFDG GISGCQKIIH EILTWEAKLD
1001: VKVEVLHDLK EIGSALYWMS LLDIVLRQID TTQFMQSAPW LGLVPGNDGQ VKHAYSDNTP FTTLLSAATS AVASSPACAN PSSYFVMSKQ AEAASLLYKS
1101: NLNSGSVLEY ALAFTSAALD RHYSKWSATP KTGFIDITTS KDFYRVFSGL QYSYLEDSMT NPSKKREMLG DSVAWAGCTI MYLLGQQLHF ELFDFSYQFL
1201: NVAEIETATV SLYQPADRSK SPNIFQGYEV ILEAMRKARR LNNHVFSMLR ARCPLEDKVA CAIKPSGAPL HRMKFGNTVS AFETLPQRAN S
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.