Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0120800-01 | |
| Os08t0544500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18410.1 | Os02t0120800-01 | AT1G20090.1 | 15294869 |
| AT5G18410.1 | Os08t0544500-01 | AT2G35110.1 | 15294869 |
| AT5G18410.1 | Os08t0544500-01 | AT2G35110.1 | 15296760 |
| AT5G18410.1 | Os08t0544500-01 | AT2G35110.1 | 17267444 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93249 | Sorghum | cytosol | 94.56 | 94.63 |
| TraesCS4D01G306200.4 | Wheat | plastid | 94.87 | 94.5 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 94.79 | 94.42 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 94.71 | 94.35 |
| Zm00001d027633_P011 | Maize | mitochondrion | 74.34 | 91.83 |
| HORVU4Hr1G078840.3 | Barley | plastid | 94.79 | 89.24 |
| Solyc11g013290.1.1 | Tomato | cytosol | 23.72 | 86.16 |
| CDX70818 | Canola | cytosol | 6.77 | 82.86 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 73.25 | 74.7 |
| Bra006457.1-P | Field mustard | cytosol | 73.09 | 73.84 |
| AT5G18410.1 | Thale cress | cytosol | 73.64 | 73.81 |
| CDX70816 | Canola | cytosol | 73.25 | 73.36 |
| CDY51228 | Canola | cytosol | 73.48 | 73.03 |
| Solyc11g013280.1.1 | Tomato | cytosol | 49.53 | 69.62 |
| GSMUA_Achr4P00580_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 14.77 | 69.09 |
| KRH33588 | Soybean | cytosol | 5.21 | 57.27 |
| Os03t0143900-00 | Rice | extracellular | 4.04 | 18.91 |
Protein Annotations
| EnsemblPlants:Os03t0143800-01 | EnsemblPlantsGene:Os03g0143800 | InterPro:Cytoplasmic_FMR1-int | InterPro:DUF1394 | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 |
| PFAM:PF05994 | PFAM:PF07159 | PIRSF:PIRSF008153 | PRINTS:PR01698 | SEG:seg | UniParc:UPI0007753BF6 |
| MapMan:20.2.2.2.1 | : | : | : | : | : |
Description
less pronounced lobe epidermal cell2PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like protein, Homolog of SCAR/WAVE complex components, Control of epidermal cell morphogenesis (Os03t0143800-01)
Coordinates
chr3:+:2432922..2448897
Molecular Weight (calculated)
146721.0 Da
IEP (calculated)
5.637
GRAVY (calculated)
-0.142
Length
1286 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAIPVEEAIA ALSTFSLEDE QPDVQGLAVL LSSERYATNS PIEYSDVAAY RLSLGEDTKA INQLNTLIQE GKEMASLLYT YRSCVKALPQ LPDSMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERLVNGPTI THFWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV STQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHAEMFRTNT VEDILQVLIV FCVESLELDF ALLFPERHTL LRVLPVLVVL ATSSEKESES LYKRVKMNRL LNIFKNDPVI
0301: PAFPDLHLSP AAILKELSSY FQNFSSQTRL LTLPSPHEIP PRELQDYQRH YLILNHMGTI RAEHDDFSIR FASAMNQMII LKSSDGADND WSRDIKGNMY
0401: DIVVEGFQLL SRWTGRIWEQ CAWKFSRPCK EPPSDSQHGS TTFFDYEKVV RWNYTGEERR ALLELIGYIK SIGLMMQRCD TLVSEALWET IHMEVQDFVQ
0501: DKLDTMLRTT FRKKKDLSRI LSDMRTLSAD WMANTSKGDP EHNSLETEEM RQSTFYPRPV APTAAQIHCL QFLICELVSG GNMRKPGGLF GNSGSGIPVE
0601: DLKQLETFFY KLSFFLHILD YTATIGTLTD LGFLWFREFY LESSRVIQFP IECSLPWMLV EHVTETQDAG LLESVLIPFD LYNDSAQHAL TCLKQRFLYD
0701: EIEAEVDLSF DLLVEKLNEI IFTYYKSCAA STLLDSSFTY LCDDGEKYFV KPLRFDAIFK LRRVMVLGRT IDLRSLITQR MNKLFRENID FLLERFESGD
0801: LCGVVELQQL LDILELTHQS ISKFLELDSY SLMLSEMQEN LSLVSYSSRI SSQIWNEMQT DFLPNFILCN TTQRFVRSLK GTHHSSQRSS ASTGKAYFYC
0901: GSHDLTMAYQ GISGLYRDFF GIPHMFAVVK LLGSRSLPGI IRALLDHISS KITAMVPKIT ALQEALPKSI GLLSFDGGIA GCQKIVHEIL TWEAKSEVKT
1001: EVLHDLKEIG SALYWMSLLD IVLRQIDTTQ FMQSAPWLGL IPGNDGQVKH AYSDNTPFTT LLSAATNAVA SSPACPNPSS FLVMAKQAEA ASLLYKSNLN
1101: SGSVLEYALA FTSAALDRHY SKWSATPKTG FIDITTSKDF YRVFSGLQYS YLEESINPSR KQEMLGDSVA WAGCTIMYLL GQQQHFELFD FSYQFLNVAE
1201: VENATVSLYQ YSDRNKSPNF LQGYEGILEA MRKARRLNNH VFSMLRARCP LEDKIACAIK PSGAPLHRMK FTNTVSAFET LPQRAT
0101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERLVNGPTI THFWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV STQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHAEMFRTNT VEDILQVLIV FCVESLELDF ALLFPERHTL LRVLPVLVVL ATSSEKESES LYKRVKMNRL LNIFKNDPVI
0301: PAFPDLHLSP AAILKELSSY FQNFSSQTRL LTLPSPHEIP PRELQDYQRH YLILNHMGTI RAEHDDFSIR FASAMNQMII LKSSDGADND WSRDIKGNMY
0401: DIVVEGFQLL SRWTGRIWEQ CAWKFSRPCK EPPSDSQHGS TTFFDYEKVV RWNYTGEERR ALLELIGYIK SIGLMMQRCD TLVSEALWET IHMEVQDFVQ
0501: DKLDTMLRTT FRKKKDLSRI LSDMRTLSAD WMANTSKGDP EHNSLETEEM RQSTFYPRPV APTAAQIHCL QFLICELVSG GNMRKPGGLF GNSGSGIPVE
0601: DLKQLETFFY KLSFFLHILD YTATIGTLTD LGFLWFREFY LESSRVIQFP IECSLPWMLV EHVTETQDAG LLESVLIPFD LYNDSAQHAL TCLKQRFLYD
0701: EIEAEVDLSF DLLVEKLNEI IFTYYKSCAA STLLDSSFTY LCDDGEKYFV KPLRFDAIFK LRRVMVLGRT IDLRSLITQR MNKLFRENID FLLERFESGD
0801: LCGVVELQQL LDILELTHQS ISKFLELDSY SLMLSEMQEN LSLVSYSSRI SSQIWNEMQT DFLPNFILCN TTQRFVRSLK GTHHSSQRSS ASTGKAYFYC
0901: GSHDLTMAYQ GISGLYRDFF GIPHMFAVVK LLGSRSLPGI IRALLDHISS KITAMVPKIT ALQEALPKSI GLLSFDGGIA GCQKIVHEIL TWEAKSEVKT
1001: EVLHDLKEIG SALYWMSLLD IVLRQIDTTQ FMQSAPWLGL IPGNDGQVKH AYSDNTPFTT LLSAATNAVA SSPACPNPSS FLVMAKQAEA ASLLYKSNLN
1101: SGSVLEYALA FTSAALDRHY SKWSATPKTG FIDITTSKDF YRVFSGLQYS YLEESINPSR KQEMLGDSVA WAGCTIMYLL GQQQHFELFD FSYQFLNVAE
1201: VENATVSLYQ YSDRNKSPNF LQGYEGILEA MRKARRLNNH VFSMLRARCP LEDKIACAIK PSGAPLHRMK FTNTVSAFET LPQRAT
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.