Factsheet for Solyc11g013290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18410.1	Solyc02g068720.2.1	AT2G35110.1	15294869
AT5G18410.1	Solyc02g068720.2.1	AT2G35110.1	15296760
AT5G18410.1	Solyc02g068720.2.1	AT2G35110.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027633_P011	Maize	mitochondrion	84.75	28.82
VIT_04s0043g00740.t01	Wine grape	cytosol	90.4	25.38
KRH68821	Soybean	nucleus	90.11	24.98
KRG97079	Soybean	nucleus	89.55	24.82
AT5G18410.1	Thale cress	cytosol	88.42	24.4
Bra006457.1-P	Field mustard	cytosol	87.57	24.35
CDX70816	Canola	cytosol	87.57	24.14
CDY51228	Canola	cytosol	87.85	24.03
Os03t0143800-01	Rice	cytosol	86.16	23.72
TraesCS4B01G308000.2	Wheat	cytosol	86.44	23.7
TraesCS4D01G306200.4	Wheat	plastid	86.44	23.7
TraesCS4A01G408900.2	Wheat	cytosol	86.16	23.63
OQU93249	Sorghum	cytosol	85.59	23.58
HORVU4Hr1G078840.3	Barley	plastid	85.88	22.25
Os03t0143900-00	Rice	extracellular	2.54	3.27
GSMUA_Achr4P00570_001	Banana	endoplasmic reticulum, plasma membrane	2.82	1.36
Solyc11g013280.1.1	Tomato	cytosol	0.85	0.33
KRH74900	Soybean	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc11g013290.1.1	EnsemblPlantsGene:Solyc11g013290.1	InterPro:Cytoplasmic_FMR1-int	InterPro:DUF1394	PANTHER:PTHR12195	PANTHER:PTHR12195:SF0
PFAM:PF07159	PIRSF:PIRSF008153	SEG:seg	UniParc:UPI000276A433	UniProt:K4D6D3	MapMan:35.1

Description

No Description!

Coordinates

chr11:-:6217215..6227943

Molecular Weight (calculated)

40371.6 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.085

Length

354 amino acids

Sequence
(BLAST)

001: MAVPIEEAIA ALSTFSLEDD QPEVQGPGFW VSAEGGATIS PIEYSDVAAY RLSLSEDTKA INQLNTLIQE GKEMGSVLYT YRSCVKALPQ LPDSMKQSQA
101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLIQLDHLK NAKASIPNDF SWYKRTFTQV SVQWQDTDSM
201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELNF ALLFPERHTL LRVLPVLVVL AASSEKDSES LYKRVKINRL MNIFKNDPVV
301: PAFPDLHLSP AAILKELSTY FPKFSAQTRL LTLPAPHELP LREAQEYPFS VSDL

Best Arabidopsis Sequence Match ( AT5G18410.1 )
(BLAST)

0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVDTKRF MQTAPWLGLI PGAEGQIVNA QDGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG
1101: GSVLEYTLAF TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITAPQSA QHEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE
1201: VETVSASHTH RNPQIHQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFETLPQKG TVG

Arabidopsis Description

PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.