CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89366
KRH50413
KRH51687
KRH61024
KRH61026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18410.1	KRH51687	AT1G20090.1	15294869
AT5G18410.1	KRH61024	AT1G20090.1	15294869
AT5G18410.1	KRH61026	AT1G20090.1	15294869
AT5G18410.1	KRG89366	AT2G35110.1	15294869
AT5G18410.1	KRH50413	AT2G35110.1	15294869
AT5G18410.1	KRG89366	AT2G35110.1	15296760
AT5G18410.1	KRH50413	AT2G35110.1	15296760
AT5G18410.1	KRG89366	AT2G35110.1	17267444
AT5G18410.1	KRH50413	AT2G35110.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97079	Soybean	nucleus	98.83	98.83
Solyc11g013290.1.1	Tomato	cytosol	24.98	90.11
VIT_04s0043g00740.t01	Wine grape	cytosol	84.81	85.88
AT5G18410.1	Thale cress	cytosol	83.79	83.4
Bra006457.1-P	Field mustard	cytosol	83.01	83.27
CDX70816	Canola	cytosol	83.4	82.94
CDY51228	Canola	cytosol	83.63	82.53
Solyc11g013280.1.1	Tomato	cytosol	57.64	80.44
KRH33588	Soybean	cytosol	7.36	80.34
KRH74900	Soybean	plastid	4.15	77.94

Protein Annotations

EMBL:ACUP02002125	EnsemblPlants:KRH68821	EnsemblPlantsGene:GLYMA_03G253000	EntrezGene:100814483	InterPro:Cytoplasmic_FMR1-int	InterPro:DUF1394
PANTHER:PTHR12195	PANTHER:PTHR12195:SF0	PFAM:PF05994	PFAM:PF07159	PIRSF:PIRSF008153	PRINTS:PR01698
ProteinID:KRH68821	ProteinID:KRH68821.1	ProteinID:KRH68822.1	SEG:seg	UniParc:UPI000233A63F	UniProt:I1JRU7
MapMan:20.2.2.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:44856374..44878349

Molecular Weight (calculated)

144904.0 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.079

Length

1277 amino acids

Sequence
(BLAST)

0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPGVW VSTERGATES PIEYSDVSAY RLSLSEDTKA LNQLNALTQE GKEMASVLYT YRSCVKALPQ LPDSMKQSQA
0101: DLYLETYQVL DLEMSRLREI QRWQASASSK LAADMQRFSR PERRINGPTI SHLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SGQWQDTDSM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FVVESLELDF ALLFPERHIL LRVLPVLVVL VTSSEKDSES LYKRVKINRL INIFKNEAVI
0301: PAFPDLHLSP AAILKELSTY FPKFSSQTRL LTLPAPHELP PREAQEYQRH YLIINHIGAI RAEHDDFVIR FASAMNQLLL LKSTDGSDVE WSKEVKGNMY
0401: DMIVEGFQLL SRWTARIWEQ CAWKFSRPCK DASPSFSDYE KVVRYNYSAE ERKALVELVS YIKSVGSMMQ RCDTLVADAL WETIHSEVQD FVQNTLATML
0501: RTTFRKKKDL SRILSDMRTL SADWMANTNK SESELQSSQH GGEESKANIF YPRAVAPTAA QVHCLQFLIY EVVSGGNLRR PGGLFGNSGS EIPVNDLKQL
0601: ETFFYKLGFF LHILDYSATV ATLTDLGFLW FREFYLESSR VIQFPIECSL PWMLVDCVLE SPNSGLLESV LMPFDIYNDS AQQALVLLKQ RFLYDEIEAE
0701: VDHCFDIFVT KLCETIFTYY KSWAASELLD PSFLFASDNA EKYAVQPIRL NMLLKITRVK LLGRMINLRS LITEWMNKVF RENIEFLFGR FECQDLCAIV
0801: ELEKLLDVLK HSHELLSRDL SVDSFSLMLN EMQENISLVS FSSRLASQIW SEMQSDFLPN FILCNTTQRF IRSSRTVPVQ KPSVPSVKPS FYCGTQDLNS
0901: AHQSFARLHS GFFGIPHMFS VVRLLGSRSL PWLIRALLDH ISNKITLLEP MITGLQDSLP KSIGLLPFDG GVTGCVRLVK EHLNWETKSE LKAEVLHGIK
1001: EIGSVLYWMG LLDIVLREKD SMDFMQTAPW LGLLPGADGQ IATSQDGGDS PVVSLFKSTA AAMVSYPGCP SPTSFHIMSK QAEAADLLYK ANLNTGSVLE
1101: YALAFTSAAL DKYCNKWSAA PKTGFIDITI SKDFYRIYSG LQIGYLEESA QVPSNSHERL GDSVAWGGCT IIYLLGQQLH FELFDFSYQI LNIAEVEAAS
1201: VMQTHKNSQF SVKGWEALLE AMKKARRLNN HVFSMLKARC PLEEKTACAI KQSGAPIHRI KFDNTVSAFE TLPQKGS

Best Arabidopsis Sequence Match ( AT5G18410.2 )
(BLAST)

0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG

Arabidopsis Description

PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.