Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50413 | Soybean | mitochondrion, nucleus | 35.88 | 95.22 |
| VIT_01s0011g01630.t01 | Wine grape | cytosol, plastid | 83.43 | 83.19 |
| Solyc02g068720.2.1 | Tomato | nucleus | 79.25 | 79.42 |
| CDY31664 | Canola | cytosol | 78.03 | 78.14 |
| CDX84262 | Canola | nucleus | 77.88 | 77.94 |
| Bra005368.1-P | Field mustard | nucleus | 77.95 | 77.34 |
| AT2G35110.1 | Thale cress | cytosol | 78.82 | 76.77 |
| GSMUA_Achr10P... | Banana | cytosol | 68.95 | 74.3 |
| Os08t0544500-01 | Rice | plasma membrane | 68.23 | 69.68 |
| KXG22838 | Sorghum | cytosol | 67.51 | 69.0 |
| TraesCS7B01G167200.1 | Wheat | cytosol | 67.29 | 68.83 |
| TraesCS7A01G268900.4 | Wheat | cytosol | 67.15 | 68.08 |
| TraesCS7D01G269500.4 | Wheat | cytosol | 67.44 | 67.73 |
| HORVU7Hr1G056570.7 | Barley | mitochondrion | 67.29 | 66.1 |
| Zm00001d046391_P001 | Maize | plasma membrane | 10.52 | 46.35 |
Protein Annotations
| EMBL:ACUP02012206 | EnsemblPlants:KRG89366 | EnsemblPlantsGene:GLYMA_20G019300 | EntrezGene:100780997 | InterPro:Nck-associated_protein-1 | ncoils:Coil |
| PANTHER:PTHR12093 | PANTHER:PTHR12093:SF10 | PFAM:PF09735 | ProteinID:KRG89366 | ProteinID:KRG89366.1 | SEG:seg |
| UniParc:UPI000233DA72 | UniProt:I1NDC1 | MapMan:20.2.2.2.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:1998615..2021164
Molecular Weight (calculated)
155640.0 Da
IEP (calculated)
6.681
GRAVY (calculated)
-0.149
Length
1388 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKSRQKFSN QDSSLSPTAA RSREWDGPSR WTDYLGPEMA SPLSSSSSRN IYHDGQSQGT TPAQSHKGIN MQWVVQLTEV AEGLMAKMYR LNQLLDYPDP
0101: INHVFSEGFW KAGVFPNHPR ICVLLSKKFP EHFSKLQLER IDKIAWDSLQ DHAELHLQSL EPWVQLLLDL MVFREQALRL ILDLSSTVIT LLPHQNSLIL
0201: HAFMDLFCSF VRVNLFSEKM PRKMLLQTYN FLHAMSRNER DCDFYHRLVQ FVDSYDPPLK GLQEDLNFVS PRIGEVLEAV GPIIFLSTDT RKLRNEGFLS
0301: PYHPRYPDIL TNSAHPLRAQ DLANVTAYRE WVLFGYLVCP DELRRVTSID IALVVLKENL VLTLFRDEYI LLHEDYQSYV LPRILESKRM AKSGRTKQKE
0401: ADLEYNVAKQ VEKMISEVHE QAILSCDAIH RERRILLKQE IGRMVLFFTD QPSLLAPNIQ MVFSALALAQ CEVIWYFQHV GIASSRSKTT RVVPVDIDPN
0501: DPTIGFLLDG MDHLCCLVRK YIAAIRGYSL SYLSSCAGRI RFLLGTPGMV ALDIEASLKG LLQQIVHHLE NLPKPQGENI SAITCDMSDF RKDWLSILLI
0601: VTSSRSSINI RHLEKATVST GKEGLLSEGN AAYNWSRCVD ELESVLSKHG SLRRLYFYHQ HLTAVFRNTM FGPEGRPQHC CAWLGIASSF PECASSIVPE
0701: EVTKIGRDAV LYVESLIESI MGGLEGLINI LDSEGGFGAL ENQLLPEQAA SYLNQTSRVS IPSYKSPKGT AGFPLPGHES FPENNGSIKM LEAAMQRLTN
0801: LCSVLNDMEP ICVLNHVFVL REYMRECILG NFRRRLLGVL KTDNDLQRPT VLESLIKRHI SIVHLAEQHI SMDITQGIRE VLLSEAFSGP VSSLHLFEKP
0901: TDQHTGSATE SVCNWYIENI IKDVSGAGIL FVPIHKCFRS TRPVGGYFAE SVTDLRELQA FVRIFGGYGV DRLDRMLKEH TAALLNCIDT SLRSNRDVLE
1001: AVATSLHAGD RIEREASVKQ IVDLETVIGF CVQAGLALAF DRLLAEASGA ILEEGAPLIH SLLDGVIKHL PDGVPEKEEI RRMRTVANTV GVVNDHDSVW
1101: VRSILEEVGG ASDGSWGLLP YLFATFMTSN IWSTTAFNVD TEGFSNNIHC LARCISAVIA GSEFVRLERE HQHRQSLTNG HASEGMDPEL SSHMSAEASI
1201: KSTLQLFVKL SADIILDSWS ETHRSHLVAQ LIFLDQLCEI SPYLPRSSLE THVPYAILRS VYSQYYADTQ STPLAILNAS PRHSPAVLLA HASPVLRHHR
1301: GGDSPQYYGH ESGYFKGSSS HNQEHLYDDI GSLRSMDNKQ RNVRRSGPLD YSASRSRVKS VEGSTSGSTG PSPLPRFAVS RSGPLAYK
0101: INHVFSEGFW KAGVFPNHPR ICVLLSKKFP EHFSKLQLER IDKIAWDSLQ DHAELHLQSL EPWVQLLLDL MVFREQALRL ILDLSSTVIT LLPHQNSLIL
0201: HAFMDLFCSF VRVNLFSEKM PRKMLLQTYN FLHAMSRNER DCDFYHRLVQ FVDSYDPPLK GLQEDLNFVS PRIGEVLEAV GPIIFLSTDT RKLRNEGFLS
0301: PYHPRYPDIL TNSAHPLRAQ DLANVTAYRE WVLFGYLVCP DELRRVTSID IALVVLKENL VLTLFRDEYI LLHEDYQSYV LPRILESKRM AKSGRTKQKE
0401: ADLEYNVAKQ VEKMISEVHE QAILSCDAIH RERRILLKQE IGRMVLFFTD QPSLLAPNIQ MVFSALALAQ CEVIWYFQHV GIASSRSKTT RVVPVDIDPN
0501: DPTIGFLLDG MDHLCCLVRK YIAAIRGYSL SYLSSCAGRI RFLLGTPGMV ALDIEASLKG LLQQIVHHLE NLPKPQGENI SAITCDMSDF RKDWLSILLI
0601: VTSSRSSINI RHLEKATVST GKEGLLSEGN AAYNWSRCVD ELESVLSKHG SLRRLYFYHQ HLTAVFRNTM FGPEGRPQHC CAWLGIASSF PECASSIVPE
0701: EVTKIGRDAV LYVESLIESI MGGLEGLINI LDSEGGFGAL ENQLLPEQAA SYLNQTSRVS IPSYKSPKGT AGFPLPGHES FPENNGSIKM LEAAMQRLTN
0801: LCSVLNDMEP ICVLNHVFVL REYMRECILG NFRRRLLGVL KTDNDLQRPT VLESLIKRHI SIVHLAEQHI SMDITQGIRE VLLSEAFSGP VSSLHLFEKP
0901: TDQHTGSATE SVCNWYIENI IKDVSGAGIL FVPIHKCFRS TRPVGGYFAE SVTDLRELQA FVRIFGGYGV DRLDRMLKEH TAALLNCIDT SLRSNRDVLE
1001: AVATSLHAGD RIEREASVKQ IVDLETVIGF CVQAGLALAF DRLLAEASGA ILEEGAPLIH SLLDGVIKHL PDGVPEKEEI RRMRTVANTV GVVNDHDSVW
1101: VRSILEEVGG ASDGSWGLLP YLFATFMTSN IWSTTAFNVD TEGFSNNIHC LARCISAVIA GSEFVRLERE HQHRQSLTNG HASEGMDPEL SSHMSAEASI
1201: KSTLQLFVKL SADIILDSWS ETHRSHLVAQ LIFLDQLCEI SPYLPRSSLE THVPYAILRS VYSQYYADTQ STPLAILNAS PRHSPAVLLA HASPVLRHHR
1301: GGDSPQYYGH ESGYFKGSSS HNQEHLYDDI GSLRSMDNKQ RNVRRSGPLD YSASRSRVKS VEGSTSGSTG PSPLPRFAVS RSGPLAYK
0001: MANSRQYYPS QDESMSPTSV RSREWEGPSR WTEYLGPEMA ASVSSTRSSK QIDGHVGGST KALNIQWVVQ MIEVADGLMA KMYRLNQILE YPDPVGHVFS
0101: EAFWKAGVFP NHPRICTLLS KKFPEHFSKL QLERIDKFSL DSLHDGAELH LQSLEPWIQL LLDLMAFREQ ALRLILDLSS TVITLLPHQN SLILHAFMDL
0201: FCAFVRVNLF AEKIPRKMLL QVYNLLHALS RNDRDCDFYH RLVQFIDSYD PPLKGLQEDL NFVSPRIGEV LEAVGPSIFL SADTRKLRNE GFLSPYHPRF
0301: PDILTNSAHP MRAQDLANVT SYREWVLLGY LVCPDELLRV TSIDIALVVL KENLVVTLFR DEYILLHEDY QLYVLPRVLE SKKMAKSGRT KQKEADLEYS
0401: VAKQVEKMIS EVHEQALQLC DTIHRERRIL LKQEIGRMVL FFTDQPSLLA PNIQMVFSAL ALAQSEVLWY FQHAGIASSR SKAARVIPVD IDPNDPTIGF
0501: LLDGMDRLCC LVRKYISAAR GYALSYLSSS AGRIRYLMGT PGIVALDLDP TLKGLFQRIV QHLESIPKAQ GENVSAITCD LSDFRKDWLS ILMIVTSSRS
0601: SINIRHLEKA TVSTGKEGLL SEGNAAYNWS RCVDELESQL SKHGSLKKLY FYHQHLTTVF RNTMFGPEGR PQHCCAWLSV ASSFPECASL IIPEEVTKFG
0701: RDAVLYVESL IESIMGGLEG LINILDSEGG FGALESQLLP EQAAAYLNNA SRISAPSVKS PRVVGGFTLP GHESYPENNK SIKMLEAAIQ RLTNLCSILN
0801: DMEPICVINH VFVLREYMRE CILGNFKRRF LTALQTDNDL QRPSVLESLI RRHMGIVHLA EQHVSMDLTQ GIREILLTEA FSGPVSSLHT FEKPAEQQQT
0901: TGSAVEVVCN WYMDNIIKDV SGAGILFAPR HKYFKSTRPV GGYFAESVTD LKELQAFVRI FGGYGVDRLD RMMKVHTAAL VNCIETSLRS NRELIEAAAA
1001: SMHSGDRVER DASVRQIVDL DTVIGFCIEA GQALAFDDLL AEASGAVLED NASLIHSMIS GIVEHIPEEI PEKKEIRRIK GVANGVGVAG DHDSEWVRLI
1101: LEEVGGANDN SWSLLPYFFA SFMTSNAWNT TGFNIETGGF SNNIHCLARC ISAVIAGSEY VRLQREYQQQ HQSLSNGHHS SENLDSEFPP RVTAEASIKS
1201: SMLLFVKFAA SIVLDSWSEA NRSHLVAKLI FLDQLCEISP YLPRSSLESH VPYTILRSIY TQYYSNTPST PLSTASPYHS PSVSLIHASP SMKNSTTPQR
1301: GSGSGSSSTA APDSGYFKGS SSSLYGQEHY TESETGNSRN NENNNNNKQR GSSRRSGPLD YSSSHKGGSG SNSTGPSPLP RFAVSRSGPI SYKQHN
0101: EAFWKAGVFP NHPRICTLLS KKFPEHFSKL QLERIDKFSL DSLHDGAELH LQSLEPWIQL LLDLMAFREQ ALRLILDLSS TVITLLPHQN SLILHAFMDL
0201: FCAFVRVNLF AEKIPRKMLL QVYNLLHALS RNDRDCDFYH RLVQFIDSYD PPLKGLQEDL NFVSPRIGEV LEAVGPSIFL SADTRKLRNE GFLSPYHPRF
0301: PDILTNSAHP MRAQDLANVT SYREWVLLGY LVCPDELLRV TSIDIALVVL KENLVVTLFR DEYILLHEDY QLYVLPRVLE SKKMAKSGRT KQKEADLEYS
0401: VAKQVEKMIS EVHEQALQLC DTIHRERRIL LKQEIGRMVL FFTDQPSLLA PNIQMVFSAL ALAQSEVLWY FQHAGIASSR SKAARVIPVD IDPNDPTIGF
0501: LLDGMDRLCC LVRKYISAAR GYALSYLSSS AGRIRYLMGT PGIVALDLDP TLKGLFQRIV QHLESIPKAQ GENVSAITCD LSDFRKDWLS ILMIVTSSRS
0601: SINIRHLEKA TVSTGKEGLL SEGNAAYNWS RCVDELESQL SKHGSLKKLY FYHQHLTTVF RNTMFGPEGR PQHCCAWLSV ASSFPECASL IIPEEVTKFG
0701: RDAVLYVESL IESIMGGLEG LINILDSEGG FGALESQLLP EQAAAYLNNA SRISAPSVKS PRVVGGFTLP GHESYPENNK SIKMLEAAIQ RLTNLCSILN
0801: DMEPICVINH VFVLREYMRE CILGNFKRRF LTALQTDNDL QRPSVLESLI RRHMGIVHLA EQHVSMDLTQ GIREILLTEA FSGPVSSLHT FEKPAEQQQT
0901: TGSAVEVVCN WYMDNIIKDV SGAGILFAPR HKYFKSTRPV GGYFAESVTD LKELQAFVRI FGGYGVDRLD RMMKVHTAAL VNCIETSLRS NRELIEAAAA
1001: SMHSGDRVER DASVRQIVDL DTVIGFCIEA GQALAFDDLL AEASGAVLED NASLIHSMIS GIVEHIPEEI PEKKEIRRIK GVANGVGVAG DHDSEWVRLI
1101: LEEVGGANDN SWSLLPYFFA SFMTSNAWNT TGFNIETGGF SNNIHCLARC ISAVIAGSEY VRLQREYQQQ HQSLSNGHHS SENLDSEFPP RVTAEASIKS
1201: SMLLFVKFAA SIVLDSWSEA NRSHLVAKLI FLDQLCEISP YLPRSSLESH VPYTILRSIY TQYYSNTPST PLSTASPYHS PSVSLIHASP SMKNSTTPQR
1301: GSGSGSSSTA APDSGYFKGS SSSLYGQEHY TESETGNSRN NENNNNNKQR GSSRRSGPLD YSSSHKGGSG SNSTGPSPLP RFAVSRSGPI SYKQHN
Arabidopsis Description
NAP1Protein NAP1 [Source:UniProtKB/Swiss-Prot;Acc:Q5S2C4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.