Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006457.1-P | Field mustard | cytosol | 98.44 | 99.29 |
| CDY51228 | Canola | cytosol | 99.3 | 98.53 |
| AT5G18410.1 | Thale cress | cytosol | 97.27 | 97.35 |
| CDX70818 | Canola | cytosol | 7.4 | 90.48 |
| Solyc11g013290.1.1 | Tomato | cytosol | 24.14 | 87.57 |
| KRG97079 | Soybean | nucleus | 82.94 | 83.4 |
| KRH68821 | Soybean | nucleus | 82.94 | 83.4 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 81.07 | 82.55 |
| Solyc11g013280.1.1 | Tomato | cytosol | 55.3 | 77.6 |
| Os03t0143800-01 | Rice | cytosol | 73.36 | 73.25 |
| OQU93249 | Sorghum | cytosol | 72.74 | 72.68 |
| Zm00001d027633_P011 | Maize | mitochondrion | 58.8 | 72.53 |
| TraesCS4D01G306200.4 | Wheat | plastid | 72.66 | 72.27 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 72.59 | 72.19 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 72.59 | 72.19 |
| HORVU4Hr1G078840.3 | Barley | plastid | 72.59 | 68.23 |
| GSMUA_Achr4P00570_001 | Banana | endoplasmic reticulum, plasma membrane | 38.24 | 66.98 |
| Os03t0143900-00 | Rice | extracellular | 4.13 | 19.27 |
Protein Annotations
| EnsemblPlants:CDX70816 | EnsemblPlantsGene:GSBRNA2T00140701001 | InterPro:Cytoplasmic_FMR1-int | InterPro:DUF1394 | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 |
| PFAM:PF05994 | PFAM:PF07159 | PIRSF:PIRSF008153 | PRINTS:PR01698 | ProteinID:CDX70816 | ProteinID:CDX70816.1 |
| SEG:seg | UniParc:UPI0004EED18D | MapMan:20.2.2.2.1 | : | : | : |
Description
BnaC03g09000D
Coordinates
chrLK031791:-:2166677..2174149
Molecular Weight (calculated)
145625.0 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.082
Length
1284 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GREMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDAM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRM ITIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYPFI LHYLIVNHIG ALRAEHDDFT IRFASSMNQL LLLKSNDGAY TEWCREVKGK
0401: MYDMVVEGFQ LLSRWTARIW EQSAWKFSRP CRDAAETQEA SGSYSDYEKV VRYNYTTEER RALVELVGYI KSVGSMLQRC DTLVADALWE TIHAEVQDFV
0501: QNTLATMLRT TFRKKKDLSR ILSDMRTLSA DWMANTRPEH EMPSSQHGGD ESKANFFYPR PVAPTAAQVH CLQFLIYEVV SGGNLRRPGG FFGNNGSEIP
0601: VNDLKQLETF FYKLSFFLHI LDYSASIGIL TDLGFLWFRE FYLESSRVIQ FPIECSLPWM LIDHILEAPN SGLLESVLLP FDIYNDSAQQ ALVVLRQRFL
0701: YDEIEAEVDH GFDIFVSRLS ESIFTYYKSW SASELLDPSF LFALDNGEKF SIQPVRFTAL FKMTKVKILG RTINLRSLIA QRMNKTFREN LEFLFDRFES
0801: QDLCAVVELE KLIDILKHSH ELLSQDLTID PFSLMLNEMQ ENISLVSFSS RLATQIWSEM QSDFLPNFIL CNTTQRFVRS SKVPPTQKPS VPSAKPSFYC
0901: GTQDLNAAHQ SFARLHSGFF GIPHLFSIVK LLGSRSLPWL IRALLDHISN KITTLEPMIS GLQEALPKSI GLLSFDGGVA GCMRLIREQL NWGTKAELKT
1001: EVLRGIKEIG SVIYTMGLLD IVLREVDTKR FMQTAPWLGL IPGAEGQIVN AQEGESPLVN LLKSATSAVV SSPGCLNPAA FYTMSKQAEA ADLLYKANMN
1101: GGSVLEYTLA FTSASLDKYC SKWSAPPKTG FVDITTSKDF YRIYGGLQIG YLEEITVPQS AQQEVLGDSI AWGGCTIIYL LGQQLHFELF DFSYQVLNVS
1201: EVETVSASHT HRNPQVLQGW EGLLEGMKKA RRLNNHVFSM LKARCPLEDK TACAIKQSGA PLPRVRFENT VSAFESLPQK GTVG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDAM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRM ITIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYPFI LHYLIVNHIG ALRAEHDDFT IRFASSMNQL LLLKSNDGAY TEWCREVKGK
0401: MYDMVVEGFQ LLSRWTARIW EQSAWKFSRP CRDAAETQEA SGSYSDYEKV VRYNYTTEER RALVELVGYI KSVGSMLQRC DTLVADALWE TIHAEVQDFV
0501: QNTLATMLRT TFRKKKDLSR ILSDMRTLSA DWMANTRPEH EMPSSQHGGD ESKANFFYPR PVAPTAAQVH CLQFLIYEVV SGGNLRRPGG FFGNNGSEIP
0601: VNDLKQLETF FYKLSFFLHI LDYSASIGIL TDLGFLWFRE FYLESSRVIQ FPIECSLPWM LIDHILEAPN SGLLESVLLP FDIYNDSAQQ ALVVLRQRFL
0701: YDEIEAEVDH GFDIFVSRLS ESIFTYYKSW SASELLDPSF LFALDNGEKF SIQPVRFTAL FKMTKVKILG RTINLRSLIA QRMNKTFREN LEFLFDRFES
0801: QDLCAVVELE KLIDILKHSH ELLSQDLTID PFSLMLNEMQ ENISLVSFSS RLATQIWSEM QSDFLPNFIL CNTTQRFVRS SKVPPTQKPS VPSAKPSFYC
0901: GTQDLNAAHQ SFARLHSGFF GIPHLFSIVK LLGSRSLPWL IRALLDHISN KITTLEPMIS GLQEALPKSI GLLSFDGGVA GCMRLIREQL NWGTKAELKT
1001: EVLRGIKEIG SVIYTMGLLD IVLREVDTKR FMQTAPWLGL IPGAEGQIVN AQEGESPLVN LLKSATSAVV SSPGCLNPAA FYTMSKQAEA ADLLYKANMN
1101: GGSVLEYTLA FTSASLDKYC SKWSAPPKTG FVDITTSKDF YRIYGGLQIG YLEEITVPQS AQQEVLGDSI AWGGCTIIYL LGQQLHFELF DFSYQVLNVS
1201: EVETVSASHT HRNPQVLQGW EGLLEGMKKA RRLNNHVFSM LKARCPLEDK TACAIKQSGA PLPRVRFENT VSAFESLPQK GTVG
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.