CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00374
KRH03376
KRH13046
KRH24128
KRH28440
KRH29101
KRH40820
KRH43411
KRH52586
KRH54462
KRH57009
KRH61926
KRH63457
KRH65511
KRH76068
KRH77032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48040.1	KRH52586	AT1G22920.1	21798944
AT3G48040.1	KRH61926	AT1G22920.1	21798944
AT3G48040.1	KRH03376	AT3G48100.1	18642946
AT3G48040.1	KRH54462	AT3G48100.1	18642946
AT3G48040.1	KRH57009	AT3G48100.1	18642946
AT3G48040.1	KRH63457	AT3G48100.1	18642946
AT5G62880.1	KRH52586	AT1G22920.1	21798944
AT5G62880.1	KRH61926	AT1G22920.1	21798944
AT5G62880.1	KRH00374	AT2G38440.1	17267444
AT5G62880.1	KRH40820	AT2G38440.1	17267444
AT5G62880.1	KRH65511	AT2G38440.1	17267444
AT5G62880.1	KRH76068	AT2G38440.1	17267444
AT5G62880.1	KRH13046	AT4G16340.1	17267444
AT5G62880.1	KRH43411	AT4G16340.1	17267444
AT5G62880.1	KRH28440	AT4G36910.1	21798944
AT5G62880.1	KRH77032	AT4G36910.1	21798944
AT5G62880.1	KRH24128	AT4G38430.1	22500990
AT5G62880.1	KRH29101	AT4G38430.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63489	Soybean	cytosol	97.26	66.98
CDY68200	Canola	cytosol	80.82	65.19
KRH57035	Soybean	cytosol	85.62	59.81
Solyc03g114070.2.1	Tomato	cytosol	83.56	58.1
VIT_17s0000g07890.t01	Wine grape	cytosol	82.88	57.62
PGSC0003DMT400063229	Potato	cytosol	82.88	57.62
AT5G62880.1	Thale cress	cytosol	81.51	55.35
Os06t0234200-03	Rice	cytosol	81.51	55.35
AT3G48040.1	Thale cress	cytosol	78.77	55.29
Bra035878.1-P	Field mustard	cytosol	77.4	55.12
CDY00332	Canola	cytosol	80.82	54.88
Bra010128.1-P	Field mustard	cytosol	78.08	54.81
CDY56740	Canola	cytosol	80.82	54.63
CDY45748	Canola	cytosol	79.45	54.46
Bra029240.1-P	Field mustard	cytosol	79.45	53.95
CDY30738	Canola	cytosol	79.45	53.95
TraesCS6D01G288300.1	Wheat	cytosol	77.4	53.05
TraesCS6A01G309000.2	Wheat	cytosol	77.4	53.05
EES05544	Sorghum	cytosol	77.4	52.8
TraesCS7B01G096200.1	Wheat	cytosol	76.71	52.58
TraesCS7A01G191400.1	Wheat	cytosol	76.71	52.58
TraesCS6B01G338000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.71	52.58
EER88130	Sorghum	cytosol	77.4	52.56
Os02t0742200-01	Rice	cytosol	76.71	52.34
TraesCS7D01G192400.1	Wheat	cytosol	76.03	52.11
Zm00001d052273_P004	Maize	plastid	76.71	51.61
HORVU6Hr1G076210.5	Barley	cytosol	75.34	51.16
KRH27004	Soybean	cytosol, nucleus, plastid	68.49	51.02
KRH24310	Soybean	cytosol	68.49	50.76
KRH29287	Soybean	cytosol	68.49	50.76
KRH51687	Soybean	cytosol, nucleus, plastid	67.81	50.25
KRH61026	Soybean	cytosol, nucleus, plastid	67.81	50.25
KRH61024	Soybean	cytosol	67.12	50.0
KRH76629	Soybean	cytosol	67.12	49.75
KRH28825	Soybean	cytosol	67.12	49.75
KRH22321	Soybean	cytosol, nucleus, plasma membrane	67.81	49.25
KRH25686	Soybean	cytosol	66.44	49.24
KRH08028	Soybean	cytosol	65.75	48.73
KRH69754	Soybean	cytosol	65.75	48.73
KRG90165	Soybean	cytosol	39.73	48.33
KRH03338	Soybean	cytosol, plastid	83.56	48.03
KRH50139	Soybean	cytosol, nucleus, plastid	63.01	46.94
HORVU7Hr1G038980.5	Barley	cytosol	76.71	44.8
KRH48356	Soybean	cytosol	64.38	44.76
KRH39320	Soybean	cytosol	64.38	44.34
KRH20356	Soybean	cytosol	62.33	42.72
GSMUA_Achr6P36120_001	Banana	cytosol	78.08	41.01
PGSC0003DMT400063227	Potato	cytosol	43.84	40.0
Zm00001d044802_P001	Maize	cytosol	76.03	38.68
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	74.66	21.54
KRH55628	Soybean	cytosol	3.42	6.85
KRH54429	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0JIW0	EMBL:ACUP02003521	EnsemblPlantsGene:GLYMA_06G1845001	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EnsemblPlants:KRH54430	ProteinID:KRH54430	ProteinID:KRH54430.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24072	PANTHER:PTHR24072:SF255	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0006EDA15B	:

Description

hypothetical protein

Coordinates

chr6:+:15978852..15982185

Molecular Weight (calculated)

16878.6 Da

IEP (calculated)

10.295

GRAVY (calculated)

-0.475

Length

146 amino acids

Sequence
(BLAST)

001: QEDYNRLRPL SYRGADVFVL AFSLVSRASY ENVLKKWIPE LQHFAPGIPL VLVGTKLDLR EDKHYMADHP SLVPVTTDQG EELRKHIGAT YYIECSSKTQ
101: QNVKAVFDAA IRMVIKPPQK QNEKRKKKPR GCFLNVLCRR NIVRLK

Best Arabidopsis Sequence Match ( AT3G48040.1 )
(BLAST)

001: MASSASKFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSVNVV VEGITVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLAFSLI SRASYENVFK
101: KWIPELQHFA PGVPIVLVGT KMDLREDRHY LSDHPGLSPV TTSQGEELRK HIGATYYIEC SSKTQQNVKA VFDAAIKVVI KPAVKQKEKK KKQKPRSGCL
201: SNILCGKN

Arabidopsis Description

ARAC8ROP10 [Source:UniProtKB/TrEMBL;Acc:A0A178VHB5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.