Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00374 | Soybean | cytosol | 80.37 | 82.3 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 15.0 | 58.96 |
| KRH76068 | Soybean | cytosol | 34.63 | 27.8 |
| KRH65511 | Soybean | cytosol | 33.53 | 27.01 |
| AT2G38440.1 | Thale cress | cytosol | 23.24 | 22.59 |
| CDX91460 | Canola | cytosol | 22.94 | 22.32 |
| Bra005107.1-P | Field mustard | cytosol | 22.79 | 21.71 |
| CDY69042 | Canola | nucleus | 18.38 | 20.97 |
| Solyc09g014980.2.1 | Tomato | cytosol | 26.18 | 20.89 |
| Os03t0298700-01 | Rice | cytosol | 16.84 | 17.57 |
| EER92402 | Sorghum | nucleus | 16.54 | 17.29 |
| Zm00001d028803_P002 | Maize | nucleus | 14.63 | 16.68 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 16.18 | 16.67 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 15.88 | 16.56 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 15.96 | 16.53 |
| Zm00001d047701_P002 | Maize | nucleus | 15.59 | 16.46 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 17.28 | 15.94 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 14.41 | 15.69 |
| KRH42863 | Soybean | nucleus | 14.93 | 15.21 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 10.66 | 12.36 |
| KRH58965 | Soybean | nucleus | 8.31 | 11.41 |
Protein Annotations
| EMBL:ACUP02006062 | EnsemblPlants:KRH40820 | EnsemblPlantsGene:GLYMA_09G279900 | EntrezGene:100775755 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | ProteinID:KRH40820 |
| ProteinID:KRH40820.1 | SEG:seg | UniParc:UPI000296F462 | UniProt:I1L757 | MapMan:20.2.2.2.4 | : |
Description
hypothetical protein
Coordinates
chr9:+:49521638..49528618
Molecular Weight (calculated)
150600.0 Da
IEP (calculated)
4.315
GRAVY (calculated)
-0.565
Length
1360 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLCRHHIRS AHALADPELR RTADSDDSEV LLEAVAMSGL VGFLRQLGDL AQFAAEMFHD LHEEVLATTA RGHSLMSRVQ QLEAEVPALE KVFLSQTHHS
0101: SFFTNGGIEW HPNLRSEQNL VTRGDLPRFI MDSYEECRGP PRLFLLDKFD VAGAGACLKR YTDPSFFIVE SASSGKATVE VQREKKIRKV KQKKGTRLRN
0201: GETPEVVSSH AKLHQLLLQE RIENACGDPA RLVKLKRKQL NGSAVEAKTG KSYMEKILEI PSPDYKMVCE TSIIPQPGKL VSDDTSESGI KILEISSITP
0301: MNRSLGNENT WSSPNEQELE VNSYSERDRD TDGYIVEVSE QISGGVTEEM SSDYLKVLNE AGSVFDEQNK RECNLDSYHS DDVISEVDDY MDALATIDSE
0401: LDTDNERGSM KDSLNIENLT DSNGKGEPQL RARFSDSQSF GDSLTSEEII SLEQDRNGEH NEVQGQMSDS LSTGTSWASD DNSPFRRDIS EDHSQLQAQF
0501: SDFQSIRNST SRIKDMSSNQ LLPTFESQRT YCHEFVVHDD AHVQGEVISD SRPVSSGSCL MDSGHSMFSS DLGAASAMSL SAGSQSHETP SGPVELHLRI
0601: EDDEEKMCLV ESIVARSDAL YPIRDDALPV VSFDNNYLNL DVCDPHVHSN DLLQTSNELN LAHEGESGDH SGIKVLQAES LNECSSEILV SGDVSLQGED
0701: PIFPSMEVDL NPDTKLLLDV QDLKSEDDII ATQLNSEDLF PVAETTTKSS ITEELCFDFI NVNKPDLAEV EVLPPDQQMN FEEVPSILPG NEISGSTCSL
0801: DLVEDDGHII KHPSSNIISS PMSNHTKLEE TLSIFADPCE KEMIVNEAGS RESLTELAAQ KVEDQPEITS TDVQLNMNRS GPCDPSDFGM WNNTQHSSLK
0901: EKIQYSSSIN DLKTVPVCSE LDSQILSGQG INPTKHVMDP LKPLIPEFLP KASKNNLEEM PPMPPLPPMQ WRTGKVQHAS LFTQREDIEV NLASLQPIQP
1001: NKLDDISQFG LPTSEKETLP YQNLFLPVMA VESNMHQYSS GFSVGMSEQP VAIPFQLPVM VNEANGQYNF LVPEHSQIQN PFLSLQDRPP LGYAVALEGE
1101: KVLNPSPCPP SLPAECVVSR ADPILQQEKS TQSPSELTEV TGLEVTKDRP EELHLVLPAE CPVSGDDPIS PKEKPTQSPS QLIEETSLEV KPLEQSSINL
1201: EREQEDPSTS PMSPPNLEIE ETNHSLLPSD GEMVFPLVTS SQTRERDNTE MPNGKPKNKR RLPQDPVIDP VAALDKSRLR KVTERVMPPR APKEDERESL
1301: LEMIRSKSFN LRPAAVQRPP SIQGPKTNLR VAAILEKANA IRQAFAGSDE DDDADSWSDS
0101: SFFTNGGIEW HPNLRSEQNL VTRGDLPRFI MDSYEECRGP PRLFLLDKFD VAGAGACLKR YTDPSFFIVE SASSGKATVE VQREKKIRKV KQKKGTRLRN
0201: GETPEVVSSH AKLHQLLLQE RIENACGDPA RLVKLKRKQL NGSAVEAKTG KSYMEKILEI PSPDYKMVCE TSIIPQPGKL VSDDTSESGI KILEISSITP
0301: MNRSLGNENT WSSPNEQELE VNSYSERDRD TDGYIVEVSE QISGGVTEEM SSDYLKVLNE AGSVFDEQNK RECNLDSYHS DDVISEVDDY MDALATIDSE
0401: LDTDNERGSM KDSLNIENLT DSNGKGEPQL RARFSDSQSF GDSLTSEEII SLEQDRNGEH NEVQGQMSDS LSTGTSWASD DNSPFRRDIS EDHSQLQAQF
0501: SDFQSIRNST SRIKDMSSNQ LLPTFESQRT YCHEFVVHDD AHVQGEVISD SRPVSSGSCL MDSGHSMFSS DLGAASAMSL SAGSQSHETP SGPVELHLRI
0601: EDDEEKMCLV ESIVARSDAL YPIRDDALPV VSFDNNYLNL DVCDPHVHSN DLLQTSNELN LAHEGESGDH SGIKVLQAES LNECSSEILV SGDVSLQGED
0701: PIFPSMEVDL NPDTKLLLDV QDLKSEDDII ATQLNSEDLF PVAETTTKSS ITEELCFDFI NVNKPDLAEV EVLPPDQQMN FEEVPSILPG NEISGSTCSL
0801: DLVEDDGHII KHPSSNIISS PMSNHTKLEE TLSIFADPCE KEMIVNEAGS RESLTELAAQ KVEDQPEITS TDVQLNMNRS GPCDPSDFGM WNNTQHSSLK
0901: EKIQYSSSIN DLKTVPVCSE LDSQILSGQG INPTKHVMDP LKPLIPEFLP KASKNNLEEM PPMPPLPPMQ WRTGKVQHAS LFTQREDIEV NLASLQPIQP
1001: NKLDDISQFG LPTSEKETLP YQNLFLPVMA VESNMHQYSS GFSVGMSEQP VAIPFQLPVM VNEANGQYNF LVPEHSQIQN PFLSLQDRPP LGYAVALEGE
1101: KVLNPSPCPP SLPAECVVSR ADPILQQEKS TQSPSELTEV TGLEVTKDRP EELHLVLPAE CPVSGDDPIS PKEKPTQSPS QLIEETSLEV KPLEQSSINL
1201: EREQEDPSTS PMSPPNLEIE ETNHSLLPSD GEMVFPLVTS SQTRERDNTE MPNGKPKNKR RLPQDPVIDP VAALDKSRLR KVTERVMPPR APKEDERESL
1301: LEMIRSKSFN LRPAAVQRPP SIQGPKTNLR VAAILEKANA IRQAFAGSDE DDDADSWSDS
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.