Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G062760.2 | |
| HORVU4Hr1G051250.3 | |
| HORVU6Hr1G076210.5 | |
| HORVU7Hr1G038980.5 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G190300.1 | Wheat | nucleus | 80.61 | 81.6 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 80.53 | 80.96 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 70.53 | 79.37 |
| Os03t0298700-01 | Rice | cytosol | 54.62 | 55.33 |
| EER92402 | Sorghum | nucleus | 51.44 | 52.19 |
| Zm00001d047701_P002 | Maize | nucleus | 49.39 | 50.62 |
| HORVU0Hr1G014100.2 | Barley | cytosol | 7.2 | 50.26 |
| Zm00001d028803_P002 | Maize | nucleus | 43.41 | 48.03 |
| HORVU2Hr1G126350.1 | Barley | cytosol | 2.35 | 46.27 |
| HORVU2Hr1G042610.1 | Barley | cytosol | 2.35 | 46.27 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 10.23 | 39.02 |
| HORVU2Hr1G014860.1 | Barley | cytosol | 6.67 | 22.45 |
| HORVU3Hr1G028090.1 | Barley | cytosol, nucleus | 4.39 | 19.08 |
| CDY39815 | Canola | nucleus | 12.88 | 17.09 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 19.02 | 17.03 |
| KRH00374 | Soybean | cytosol | 16.44 | 16.34 |
| CDY69042 | Canola | nucleus | 14.7 | 16.28 |
| KRH40820 | Soybean | cytosol | 16.67 | 16.18 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 15.83 | 16.15 |
| AT2G38440.1 | Thale cress | cytosol | 16.67 | 15.73 |
| AT5G01730.1 | Thale cress | cytosol | 13.48 | 15.21 |
| Bra005107.1-P | Field mustard | cytosol | 16.29 | 15.06 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 14.09 | 14.89 |
| CDX91460 | Canola | cytosol | 15.45 | 14.59 |
| KRH65511 | Soybean | cytosol | 17.5 | 13.68 |
| KRH76068 | Soybean | cytosol | 17.35 | 13.52 |
| Solyc09g014980.2.1 | Tomato | cytosol | 16.82 | 13.03 |
| HORVU0Hr1G014110.1 | Barley | cytosol, nucleus, plastid | 9.24 | 5.92 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G055030.24 | EnsemblPlantsGene:HORVU4Hr1G055030 | Gene3D:1.20.58.1570 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | InterPro:SCAR/WAVE_fam |
| PANTHER:PTHR12902 | PANTHER:PTHR12902:SF10 | SEG:seg | UniParc:UPI000B46F6B1 | UniProt:A0A287P4I7 | MapMan:20.2.2.2.4 |
Description
No Description!
Coordinates
chrchr4H:-:461448321..461454093
Molecular Weight (calculated)
145562.0 Da
IEP (calculated)
4.309
GRAVY (calculated)
-0.698
Length
1320 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLSRHTVAN EYSLGGRDLY KRADQHDPEA VLDGVATAGL VGLLRQLGDL AEYAHAAHIS PLTTPLTSRF AAEVFHGLYD EVMTASARGH GLVLRVQQLE
0101: AELPLLEKDV CQRDYLYVAS NRGVDWHANL RVDHGVVTTG DTPRFIMDSI KQCHGPPRLF MLDKYDIGGE GTCMKRYSDP AFFKTDSACS RMLQEGMRTE
0201: RRPIRTMEIR PNLQNAEIFG PSDGANNGSR FKTDLSDEVL DEVPTRRQRL KHRQLNGTVF RSFRPQMQDL YEKSSPEEKT VSMDRSEVQI SFTVSLDTNA
0301: EERDIMMDTS SSTGKSKEGY YATTRKRRST SQETPSSCSD DRSAGSSKGY NSEVDIYVDA LTTMGSEVGT DSEHRDHGGQ GVFALAPSGK MCSDAQGAAV
0401: SRSSTFSKKE DSCSSDVASA NRDEADHSEE DASVCVPEAK LVGGEHERTS SLEELFSQEK PVSCEHERTV SLEELLTGDM LLSESDTREL VTESNGNAIV
0501: SNATSDGTAD ATKRSKGNNV SAISFKKTAS KRCVESMELF ASKVGILPRK LSKKHDPFSD SLRNMAKQLL ELKCDGTQDT DLYEFEVNGD GFNVECRKMA
0601: HPRVEIMEES FRKSISFDSP QDDVGSRECQ LEVVDQESDH DVPTADSPQD SVPDENGFQH TDVYLTVITS PSPKEEEEEE EEGWAVVAPD EHSSAGIVDH
0701: ASELIQEQTE DIHTEVFSEN ASDMSEDLKE IRICDEHVYA EDADGCSESE EYASDEEIAE KTGEHVAPDD VISSRISSKQ SDDPCQVTPF TLTDADFAVA
0801: SEGPENYIPE MEHVTLLETV VETGLPKGLT ESVISSEAAG PDNEQCCLHP ETSLPQDTVL GSCELLDQNE QLQLHSSSMM SAIPDPAVNT GEIHELHEEP
0901: PNPCNGISTE IFADQLAPDS RDLPLPSISS FDWMLNGLMN KSLNVVPAPS SNIIDNGSSE DTEEAPPLPP LPPMQWRATK LQTGSISLFA KSGRPPRPKP
1001: PVKHQENDNN FALVETNQES ENAQEISRNN GFTSQKETAQ ARVCSETPKD LLPESDSQEN NLQEGYRECD VQSSNLFFSS EVKCNTDVTS VGDDAHTMKP
1101: PELIVIPEEA WSELVDIKPI LKQEEERKQQ LINRVSNCSS IHASGLPTEK TTVDHERSDQ KEELSAADSN TITDSEENKP NGLPCQDNIQ SPDFSVQQED
1201: SSNDMVKEFS SALEEELAKL PPHSVPEPPK YPLLQVISHD RSMLRKAPTL VQPSSKLSDE KNTVLDEIKN KTFNLKPVVA KRPNVMGGPR TNLQVAAILE
1301: RANAIRQAVA DDDDEDSWSE
0101: AELPLLEKDV CQRDYLYVAS NRGVDWHANL RVDHGVVTTG DTPRFIMDSI KQCHGPPRLF MLDKYDIGGE GTCMKRYSDP AFFKTDSACS RMLQEGMRTE
0201: RRPIRTMEIR PNLQNAEIFG PSDGANNGSR FKTDLSDEVL DEVPTRRQRL KHRQLNGTVF RSFRPQMQDL YEKSSPEEKT VSMDRSEVQI SFTVSLDTNA
0301: EERDIMMDTS SSTGKSKEGY YATTRKRRST SQETPSSCSD DRSAGSSKGY NSEVDIYVDA LTTMGSEVGT DSEHRDHGGQ GVFALAPSGK MCSDAQGAAV
0401: SRSSTFSKKE DSCSSDVASA NRDEADHSEE DASVCVPEAK LVGGEHERTS SLEELFSQEK PVSCEHERTV SLEELLTGDM LLSESDTREL VTESNGNAIV
0501: SNATSDGTAD ATKRSKGNNV SAISFKKTAS KRCVESMELF ASKVGILPRK LSKKHDPFSD SLRNMAKQLL ELKCDGTQDT DLYEFEVNGD GFNVECRKMA
0601: HPRVEIMEES FRKSISFDSP QDDVGSRECQ LEVVDQESDH DVPTADSPQD SVPDENGFQH TDVYLTVITS PSPKEEEEEE EEGWAVVAPD EHSSAGIVDH
0701: ASELIQEQTE DIHTEVFSEN ASDMSEDLKE IRICDEHVYA EDADGCSESE EYASDEEIAE KTGEHVAPDD VISSRISSKQ SDDPCQVTPF TLTDADFAVA
0801: SEGPENYIPE MEHVTLLETV VETGLPKGLT ESVISSEAAG PDNEQCCLHP ETSLPQDTVL GSCELLDQNE QLQLHSSSMM SAIPDPAVNT GEIHELHEEP
0901: PNPCNGISTE IFADQLAPDS RDLPLPSISS FDWMLNGLMN KSLNVVPAPS SNIIDNGSSE DTEEAPPLPP LPPMQWRATK LQTGSISLFA KSGRPPRPKP
1001: PVKHQENDNN FALVETNQES ENAQEISRNN GFTSQKETAQ ARVCSETPKD LLPESDSQEN NLQEGYRECD VQSSNLFFSS EVKCNTDVTS VGDDAHTMKP
1101: PELIVIPEEA WSELVDIKPI LKQEEERKQQ LINRVSNCSS IHASGLPTEK TTVDHERSDQ KEELSAADSN TITDSEENKP NGLPCQDNIQ SPDFSVQQED
1201: SSNDMVKEFS SALEEELAKL PPHSVPEPPK YPLLQVISHD RSMLRKAPTL VQPSSKLSDE KNTVLDEIKN KTFNLKPVVA KRPNVMGGPR TNLQVAAILE
1301: RANAIRQAVA DDDDEDSWSE
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.