Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69042 | Canola | nucleus | 71.53 | 83.89 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 13.09 | 52.89 |
| AT2G38440.1 | Thale cress | cytosol | 51.22 | 51.18 |
| CDY39815 | Canola | nucleus | 17.17 | 24.12 |
| KRH40820 | Soybean | cytosol | 22.32 | 22.94 |
| KRH76068 | Soybean | cytosol | 26.54 | 21.9 |
| KRH00374 | Soybean | cytosol | 19.96 | 21.01 |
| KRH65511 | Soybean | cytosol | 25.25 | 20.91 |
| Solyc09g014980.2.1 | Tomato | cytosol | 24.96 | 20.48 |
| CDY17225 | Canola | nucleus | 11.37 | 19.61 |
| CDX78876 | Canola | nucleus | 10.09 | 19.42 |
| CDX90172 | Canola | nucleus | 12.45 | 18.12 |
| Os03t0298700-01 | Rice | cytosol | 16.88 | 18.11 |
| CDY63143 | Canola | nucleus | 11.37 | 17.91 |
| EER92402 | Sorghum | nucleus | 16.38 | 17.6 |
| CDY43322 | Canola | nucleus | 11.95 | 17.52 |
| Zm00001d047701_P002 | Maize | nucleus | 16.09 | 17.47 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 15.59 | 17.45 |
| Zm00001d028803_P002 | Maize | nucleus | 14.45 | 16.93 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 14.95 | 16.03 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 14.74 | 15.69 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 14.59 | 15.45 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 15.67 | 14.86 |
| CDX99451 | Canola | nucleus | 14.74 | 10.81 |
| CDX78875 | Canola | extracellular, vacuole | 6.29 | 10.74 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 8.15 | 9.72 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | GO:A0A078DQ25 | EnsemblPlants:CDX91460 | ProteinID:CDX91460 |
| ProteinID:CDX91460.1 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | EnsemblPlantsGene:GSBRNA2T00152793001 | InterPro:IPR003124 | PFscan:PS51082 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 |
| InterPro:SCAR/WAVE_fam | UniParc:UPI0004EC3A0A | InterPro:WH2_dom | SEG:seg | : | : |
Description
BnaC04g06900D
Coordinates
chrLK031867:+:1166074..1171911
Molecular Weight (calculated)
150961.0 Da
IEP (calculated)
4.172
GRAVY (calculated)
-0.675
Length
1398 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLTRYQSRN EYGLADPDLY QSADKDDPEA LLEGVAMAGL VGLLRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLESELPFVE KALLCQTDHS
0101: PFFSNKGVEW HSNLQLEQSV VTRGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRHE TSSYEASWDD IQREKKSLKA KRRVSHWRNG
0201: GTPENALTSH AKLHELFREE HLEAIHTDPA RVVKLKTRKL DGYSLISKSG ESYMGRFVQT SVNDEAGYEN ISLNQPELLT WNIDSAKDVV TDIPEISMVD
0301: APEKSHAGTR TDVSLPNQLE NAGFIEKDIE TVPESTHNGF PGTTLTKDSQ TNLNGKQGFL QHRSYSEDLT SEADNYVDAP ATMESETETD DEYSRLKHRS
0401: DALNDGNHHT YSDVDEKREN PPQFSFLHSV GNTPVSENGQ GSFGKRSTSC SYSDTASVSI DDQSDGEKFS GRLPSTSSVK SELVGPSSTA TPEANKVSHD
0501: SNVQESVSSS NADGQASFIS NDSCSSTRSV SQNAESCSLT VQSLAPEVVE TSAELARINP VKGGNDGSEV DPVDSRSGAS FDVKNSNFPS ETSSVSSTSE
0601: GSKYDTAVQK NCMVDYSSNV ANSVPGPPVF FDSQTGEQLP VADNDVETDS PAAANLGNDT ESCDGSSRTG EVLPFSAGME MEVSPDFPSK VCLPGTIDES
0701: LFEDTLDDET PSATVANAVS GVDSRSADVD NEQSCAFGTT AEVSISESHE DTLENGMSAP TELDSMLTSA FNSGGEKSVG YASPNCSRFD EQISDIPAEF
0801: HSSHIHDEGV HDLPGLDNIS TDIVPKEDLA VSDNHADISS DDEDHAVSLS STSMKGSLPW RSTNTSKSSS EATDTCHDTA VESNGILPAK NNSESEKTVQ
0901: ESPLEASSEG LGTSQDNNDL AGSESVSPMI SLDQSNRDTE TKSPCESIPD ENGIDSLPAN NLNLLESLTT EPLVKVKTPC VSHALEDEEL KQSSVSRGLE
1001: FVPQSAGIEW NNPNQELNLD PIFPSFGLIP ETTTPNQEDM PPLPPLPPMQ WRIGKAPQSF LPNFMGELGE TSSSAPSASP PSGSSLNVQM WSTPELSESL
1101: GREKSEQLPG ESMTSESEKP LHSSIKFPSV ATDLNSQYDS FGSQRTQSAD PSIELLAIPN HGSIEDVGSE ENNLLADHAS QNQELISAQK SSLQMPQEPS
1201: AENEDFEDDT DVQVSETSRG QKDCLETEAL TPPQSAKVED NGHSDPDASN AETAEPSNSS VQKITPASVG DAMWPVNAFT VAPTLDTDKL EEVPMVKLPR
1301: PRSPLVDAVA AHDRRTLKKV SERVQPPIKS KQDDKDSLLA QIRNKSVSLK PAVATRPSIQ TGPKTNLRVA AILEKANTIR QAMAGSDEDE DSDSWSDS
0101: PFFSNKGVEW HSNLQLEQSV VTRGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRHE TSSYEASWDD IQREKKSLKA KRRVSHWRNG
0201: GTPENALTSH AKLHELFREE HLEAIHTDPA RVVKLKTRKL DGYSLISKSG ESYMGRFVQT SVNDEAGYEN ISLNQPELLT WNIDSAKDVV TDIPEISMVD
0301: APEKSHAGTR TDVSLPNQLE NAGFIEKDIE TVPESTHNGF PGTTLTKDSQ TNLNGKQGFL QHRSYSEDLT SEADNYVDAP ATMESETETD DEYSRLKHRS
0401: DALNDGNHHT YSDVDEKREN PPQFSFLHSV GNTPVSENGQ GSFGKRSTSC SYSDTASVSI DDQSDGEKFS GRLPSTSSVK SELVGPSSTA TPEANKVSHD
0501: SNVQESVSSS NADGQASFIS NDSCSSTRSV SQNAESCSLT VQSLAPEVVE TSAELARINP VKGGNDGSEV DPVDSRSGAS FDVKNSNFPS ETSSVSSTSE
0601: GSKYDTAVQK NCMVDYSSNV ANSVPGPPVF FDSQTGEQLP VADNDVETDS PAAANLGNDT ESCDGSSRTG EVLPFSAGME MEVSPDFPSK VCLPGTIDES
0701: LFEDTLDDET PSATVANAVS GVDSRSADVD NEQSCAFGTT AEVSISESHE DTLENGMSAP TELDSMLTSA FNSGGEKSVG YASPNCSRFD EQISDIPAEF
0801: HSSHIHDEGV HDLPGLDNIS TDIVPKEDLA VSDNHADISS DDEDHAVSLS STSMKGSLPW RSTNTSKSSS EATDTCHDTA VESNGILPAK NNSESEKTVQ
0901: ESPLEASSEG LGTSQDNNDL AGSESVSPMI SLDQSNRDTE TKSPCESIPD ENGIDSLPAN NLNLLESLTT EPLVKVKTPC VSHALEDEEL KQSSVSRGLE
1001: FVPQSAGIEW NNPNQELNLD PIFPSFGLIP ETTTPNQEDM PPLPPLPPMQ WRIGKAPQSF LPNFMGELGE TSSSAPSASP PSGSSLNVQM WSTPELSESL
1101: GREKSEQLPG ESMTSESEKP LHSSIKFPSV ATDLNSQYDS FGSQRTQSAD PSIELLAIPN HGSIEDVGSE ENNLLADHAS QNQELISAQK SSLQMPQEPS
1201: AENEDFEDDT DVQVSETSRG QKDCLETEAL TPPQSAKVED NGHSDPDASN AETAEPSNSS VQKITPASVG DAMWPVNAFT VAPTLDTDKL EEVPMVKLPR
1301: PRSPLVDAVA AHDRRTLKKV SERVQPPIKS KQDDKDSLLA QIRNKSVSLK PAVATRPSIQ TGPKTNLRVA AILEKANTIR QAMAGSDEDE DSDSWSDS
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.