Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G190300.1 | Wheat | nucleus | 89.51 | 80.52 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 89.86 | 80.27 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 79.37 | 70.53 |
| Os03t0298700-01 | Rice | cytosol | 50.98 | 45.89 |
| EER92402 | Sorghum | nucleus | 46.21 | 41.66 |
| Zm00001d047701_P002 | Maize | nucleus | 43.82 | 39.91 |
| Zm00001d028803_P002 | Maize | nucleus | 37.85 | 37.22 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 4.01 | 13.58 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 15.43 | 12.28 |
| TraesCS2B01G106000.1 | Wheat | cytosol | 3.41 | 10.93 |
| KRH00374 | Soybean | cytosol | 12.19 | 10.77 |
| KRH40820 | Soybean | cytosol | 12.36 | 10.66 |
| CDY39815 | Canola | nucleus | 8.7 | 10.25 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 10.57 | 9.93 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 10.57 | 9.66 |
| AT5G01730.1 | Thale cress | cytosol | 9.29 | 9.32 |
| AT2G38440.1 | Thale cress | cytosol | 11.08 | 9.29 |
| CDY69042 | Canola | nucleus | 8.7 | 8.56 |
| KRH76068 | Soybean | cytosol | 12.02 | 8.32 |
| KRH65511 | Soybean | cytosol | 11.94 | 8.29 |
| Bra005107.1-P | Field mustard | cytosol | 10.06 | 8.26 |
| CDX91460 | Canola | cytosol | 9.72 | 8.15 |
| Solyc09g014980.2.1 | Tomato | cytosol | 10.83 | 7.45 |
| TraesCS5B01G484800.1 | Wheat | nucleus | 12.28 | 6.45 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G189000.1 | EnsemblPlantsGene:TraesCS4B01G189000 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 |
| PANTHER:PTHR12902:SF10 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:411531723..411536010
Molecular Weight (calculated)
129096.0 Da
IEP (calculated)
4.157
GRAVY (calculated)
-0.762
Length
1173 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSIKQAMGL QDCSCLTRYD IGGEGTCMKR YSDPAFFKTD SACSRMLQEG MRTERRPIRT MEIRPNLQNA EIFRASDGAN NDSRFKTDLS GEVLDEVPTR
0101: RQRLKHRQLN GTVFRSFRPQ MQDLYEKASP EEKTFSMDRS EVQISFTDSP DTNVEERDIM VDTSSTTEKG KEGYYATARK RRSTSQETPS SCSAGSSKGY
0201: SSEVDIYVDT LTTMGSDSEH RDHGGQGAFA LGKMCSDAQG AAVSRSSTFS KKEDSCSSDV GSGNRDEADH SEGDVTVCVT EAKLVGGEHE RTSSLEELFS
0301: QEKPVSCEHE RTVSLEELLT GDILLSEPDT RELATESSGN AIVSNATSDG TADATKKAKG NNVSAISFKK TASKRCVESM ELFASKVGIL PRKLSKKHDP
0401: FSDSLRNMAK ELLELKCDGT QDTDLYEFEA NGDGFDVKCR KMAHPPIETM EESFRKSISF DSPQDDVGSR ECQLEVVDQE SNHEVPTADS PQDSVPDENG
0501: FEHIDVYLTD IVSPSPKEDG EEEEEDDEEE EEGWAVAAPD EHSSVGMLNH ASELIQEHTE DIHTEGASEN ASDMGEDLKE VCICEERVNV EDADGCSESD
0601: ENASEDEITE NIGEHVALDD VISSPISSKQ SDDPCHVTPF TLKDADIAVA SEGPDNYSTE MEHVTLLETV AETGLPKVVT EQVVSSEAAL PDDEQCCPHP
0701: ETSLPQDTVL GSCELLDQNE QLQLHSSSMM SATPDPTVNT GEIHELHEEP PNPCNSISTD IFADQLAPDS TDLPLPSISS FDWMLSGLMK KSLNVLPAPS
0801: SNINLQEISS SEDTEETPPL PPLPPVQWRA TKLQTGSTSL FAKLGRPPRP KPPVKQLENE NNSAPGETNQ ESENVQEIGW NNCFSSQKEM AQATTLCSET
0901: RTDLLPESDS QENNVQEGYK ECDVQSSNLF CSSEVKCNTD VTSVGDDMHT FKPPELIVIP EEAWSELVDM KPILKQEEER KQQLINGVSD CSSIHTSGLP
1001: IEKTTVEHES SDQKEELSAA DSNTTTDSEE NKPNGLPCQD DIQNPDFSVQ QEDKSNDMVR DFSSALEEEL AKLPAHSVPE LPRYPLLQVI SHDRSMLRKA
1101: PTLVQPSSKL SDEKNTVLDQ IKNKTFNLKP VVTKRPNVMG GPRTNLQVAA ILERANAIHQ AVADDDDEDS WSE
0101: RQRLKHRQLN GTVFRSFRPQ MQDLYEKASP EEKTFSMDRS EVQISFTDSP DTNVEERDIM VDTSSTTEKG KEGYYATARK RRSTSQETPS SCSAGSSKGY
0201: SSEVDIYVDT LTTMGSDSEH RDHGGQGAFA LGKMCSDAQG AAVSRSSTFS KKEDSCSSDV GSGNRDEADH SEGDVTVCVT EAKLVGGEHE RTSSLEELFS
0301: QEKPVSCEHE RTVSLEELLT GDILLSEPDT RELATESSGN AIVSNATSDG TADATKKAKG NNVSAISFKK TASKRCVESM ELFASKVGIL PRKLSKKHDP
0401: FSDSLRNMAK ELLELKCDGT QDTDLYEFEA NGDGFDVKCR KMAHPPIETM EESFRKSISF DSPQDDVGSR ECQLEVVDQE SNHEVPTADS PQDSVPDENG
0501: FEHIDVYLTD IVSPSPKEDG EEEEEDDEEE EEGWAVAAPD EHSSVGMLNH ASELIQEHTE DIHTEGASEN ASDMGEDLKE VCICEERVNV EDADGCSESD
0601: ENASEDEITE NIGEHVALDD VISSPISSKQ SDDPCHVTPF TLKDADIAVA SEGPDNYSTE MEHVTLLETV AETGLPKVVT EQVVSSEAAL PDDEQCCPHP
0701: ETSLPQDTVL GSCELLDQNE QLQLHSSSMM SATPDPTVNT GEIHELHEEP PNPCNSISTD IFADQLAPDS TDLPLPSISS FDWMLSGLMK KSLNVLPAPS
0801: SNINLQEISS SEDTEETPPL PPLPPVQWRA TKLQTGSTSL FAKLGRPPRP KPPVKQLENE NNSAPGETNQ ESENVQEIGW NNCFSSQKEM AQATTLCSET
0901: RTDLLPESDS QENNVQEGYK ECDVQSSNLF CSSEVKCNTD VTSVGDDMHT FKPPELIVIP EEAWSELVDM KPILKQEEER KQQLINGVSD CSSIHTSGLP
1001: IEKTTVEHES SDQKEELSAA DSNTTTDSEE NKPNGLPCQD DIQNPDFSVQ QEDKSNDMVR DFSSALEEEL AKLPAHSVPE LPRYPLLQVI SHDRSMLRKA
1101: PTLVQPSSKL SDEKNTVLDQ IKNKTFNLKP VVTKRPNVMG GPRTNLQVAA ILERANAIHQ AVADDDDEDS WSE
001: MEKFLKNSSP YCERVHGTMD QSSPAMETEV TVCSEQEDLP IPSLVYSNSG GTRKYNEMEI ESIAGHEILE IPFVPHEITV NEKSPVVCLE SSSSVNLCCK
101: TNNDADSPAS TESEVKEAGS DDKAGCDHGF PGFGQPQICT NAEVNQTEVL TQFSNVLRHS PEEGESSLLC TDIQRASPES KPHKAEEAAV DLDESFSQMT
201: PDIDSAGMGT LEILQTPFSL SCYESPANLP EDSGSHLELQ SNKANAEACE VFEVRRDPML NISPETHLLK VTQVPQDAYE GGTNDVHSQH VFSVETASEI
301: SVSALVEDQF SSITNQEIEA LESEDISSEA GHFIPDTKKS LNETSVALES DFLLPNHYIS TFDNFEDLSL SADAQDYAAP KEDETNSQDG SSMNPAQSKH
401: ISTSEISSEN GTLMSDTPRD LHTGYGSLSA SSCLEDGLAN PDLAEISSYS GQEDPQTMSI VSDDSSDPEV PIPDGTCFAG DVDHDNQTGL NNKAIETVPQ
501: KELETISDPQ ESLLGTEECL SSEYCLQIQN QRQESPSETG SANSRTSSDE SPPTQNGSVG VQSSPLDVFP SSITEIEALH APYQEIFTSL NDHISESVLS
601: KGLTDEEDFL NVSPESILPL STSLHETPQA NPEITPPLPP LPPTQWWMGK LVESTEMPSL AGSGNNSFNI QRDENTQNGS VQANEAQYPS EVSVTDGENH
701: NFHIYTEESK ATEEQSPSGV NGTSDTYMES KHKCLNRTPE DSFSLAESAQ GLEADWRTEA MALEWFSQNL REHNNPHPAK LEEEEPQVDH PLEKPGQTKF
801: RQTLRDNNSY NQNQKAGKLK RDEDTLVIGI DRSMLRKVSE GNRTHVGARV DENDSLLEII RSKSFNLRPA DASGRPNFQV AVPKTNLKVA AILEKANTLR
901: QAMAGSDDEH DSDSWSE
101: TNNDADSPAS TESEVKEAGS DDKAGCDHGF PGFGQPQICT NAEVNQTEVL TQFSNVLRHS PEEGESSLLC TDIQRASPES KPHKAEEAAV DLDESFSQMT
201: PDIDSAGMGT LEILQTPFSL SCYESPANLP EDSGSHLELQ SNKANAEACE VFEVRRDPML NISPETHLLK VTQVPQDAYE GGTNDVHSQH VFSVETASEI
301: SVSALVEDQF SSITNQEIEA LESEDISSEA GHFIPDTKKS LNETSVALES DFLLPNHYIS TFDNFEDLSL SADAQDYAAP KEDETNSQDG SSMNPAQSKH
401: ISTSEISSEN GTLMSDTPRD LHTGYGSLSA SSCLEDGLAN PDLAEISSYS GQEDPQTMSI VSDDSSDPEV PIPDGTCFAG DVDHDNQTGL NNKAIETVPQ
501: KELETISDPQ ESLLGTEECL SSEYCLQIQN QRQESPSETG SANSRTSSDE SPPTQNGSVG VQSSPLDVFP SSITEIEALH APYQEIFTSL NDHISESVLS
601: KGLTDEEDFL NVSPESILPL STSLHETPQA NPEITPPLPP LPPTQWWMGK LVESTEMPSL AGSGNNSFNI QRDENTQNGS VQANEAQYPS EVSVTDGENH
701: NFHIYTEESK ATEEQSPSGV NGTSDTYMES KHKCLNRTPE DSFSLAESAQ GLEADWRTEA MALEWFSQNL REHNNPHPAK LEEEEPQVDH PLEKPGQTKF
801: RQTLRDNNSY NQNQKAGKLK RDEDTLVIGI DRSMLRKVSE GNRTHVGARV DENDSLLEII RSKSFNLRPA DASGRPNFQV AVPKTNLKVA AILEKANTLR
901: QAMAGSDDEH DSDSWSE
Arabidopsis Description
SCAR4Protein SCAR4 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.