Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G190300.1 | Wheat | nucleus | 93.98 | 94.63 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 80.27 | 89.86 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 80.96 | 80.53 |
| Os03t0298700-01 | Rice | cytosol | 55.83 | 56.25 |
| EER92402 | Sorghum | nucleus | 51.41 | 51.88 |
| Zm00001d047701_P002 | Maize | nucleus | 49.2 | 50.16 |
| Zm00001d028803_P002 | Maize | nucleus | 42.88 | 47.19 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 9.9 | 37.57 |
| TraesCS2A01G090500.1 | Wheat | nucleus | 8.07 | 26.17 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 19.95 | 17.77 |
| CDY39815 | Canola | nucleus | 12.87 | 16.98 |
| KRH00374 | Soybean | cytosol | 16.53 | 16.34 |
| CDY69042 | Canola | nucleus | 14.78 | 16.28 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 15.23 | 16.01 |
| KRH40820 | Soybean | cytosol | 16.53 | 15.96 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 15.46 | 15.82 |
| AT2G38440.1 | Thale cress | cytosol | 16.6 | 15.58 |
| AT5G01730.1 | Thale cress | cytosol | 13.63 | 15.3 |
| Bra005107.1-P | Field mustard | cytosol | 16.37 | 15.06 |
| CDX91460 | Canola | cytosol | 15.69 | 14.74 |
| KRH76068 | Soybean | cytosol | 17.75 | 13.75 |
| KRH65511 | Soybean | cytosol | 17.29 | 13.45 |
| Solyc09g014980.2.1 | Tomato | cytosol | 16.45 | 12.68 |
| TraesCS5A01G472100.1 | Wheat | nucleus | 16.98 | 9.92 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G115200.1 | EnsemblPlantsGene:TraesCS4A01G115200 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 |
| InterPro:SCAR/WAVE_fam | ncoils:Coil | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF10 | SEG:seg | MapMan:20.2.2.2.4 |
Description
No Description!
Coordinates
chr4A:-:140279365..140285037
Molecular Weight (calculated)
144924.0 Da
IEP (calculated)
4.225
GRAVY (calculated)
-0.743
Length
1313 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLSRHTVAN EYSLGGRDLY KRADQHDPEA VLDGVATAGL VGLLRQLGDL AEFAAEVFHG LYDEVMTASA RGHGLVLRVQ QLEAELPLLE KDVCHRDYLY
0101: VASNRGVDWH ANLRVDHGVV TTGDTPRFIM DSIKQCHGPP RLFMLDKYDI GGEGTCMKRY SDPAFFKTDS ACSRMLQEGI RTERRPIRTM EIRPDLQNAE
0201: IFRPSDGANN DSRFKTDLSG EALDEVPPRR QRLKHRQLNG TVFRSFRPQM QDLYGKASPE EKTFSMDRSE VQISFTDSPD TNAEERDIMV DTSSSTEKGK
0301: GGYYATARKR RSTSQETPSS CSAGSSKGYS SEVDIYVDTL TTMGSEVETD SEHRDHGGQG AFASAPSGKM CSDAQGAAVS RSSTFSKKED SCSSDVGSAN
0401: RDEADHSEGD VAVCVTEAKL VGGEHERTSS LEELFSQEKP VSCEHERTVS LEELLTGDIL LSEPDTRELA TESNSNAIVS NATPDGTVDA TKRAKGNNVS
0501: AISFKKTASK RCVESMELFA SKVGILPRKL SKKHDPFSDS LRNMAKELLE LKCDGTQDTD LYEFEANGDG FDVKCRKMAH PPIEIMEESF RKSISFDSPQ
0601: DVGSRECQLE VVDQESDHDV PTADSPQDSV PDENGFQHTD VYLTDITSPS PKKEEEEEEE DEEEEEEEEE EEEEGWTVAA PDEHSSAGML NHASELIQEH
0701: TEDIHTEGAS ENASDMGEDL KEVCICEERV NAEDADGCSE SDEYASEEEI TENTGEHVVP DDVISPISSK QSDDPCQVTP FTLKDADLAA AREGQDNYIP
0801: EMKHVTLLET VVETGLPKVV TEPVVSSEAA VPDDEQCCLH PETSLPQDTV LGSCELLDQN EQLQLHSSSM MSATPDPTVK TGEMHELYEE PPNPCNSIST
0901: DIFADQLAPD STDLPLPSIS SFDWMLSGLM KKSLNVLPAP SSDINLQEIS SSEDTEEAPP LPPLPPVQWR ATKPQTGSAS LFAKFGRPPR PKPPVKQLEN
1001: ENNSAPGETN QESENVQEIS WNNGFSSQKE MAQATTLCSQ TRTDLLPESD SQENNVQEGY KEYDVQSSNL FCSSEVKCNT DVTSVGDDIH ALKPPELIVI
1101: PEEAWSELVD IKPILKQEEE RKQQLINGVS DCSSIHTSGL PIEKTTVEHE RFDQKEELSA ADSNTTTDSE ENKPNGLPCQ DDIQNPDFSV QQEDKSNDIR
1201: EFSSALEEEL AKLPPHSVPE PPRYPLLQVI SHDRSMLRKA PTLVQPSSKL SDEKNTVLDQ IKNKTFNLKP VVAKRPNVMG GPRTNLQVAA ILERANAIRQ
1301: AVADDDDEDS WSE
0101: VASNRGVDWH ANLRVDHGVV TTGDTPRFIM DSIKQCHGPP RLFMLDKYDI GGEGTCMKRY SDPAFFKTDS ACSRMLQEGI RTERRPIRTM EIRPDLQNAE
0201: IFRPSDGANN DSRFKTDLSG EALDEVPPRR QRLKHRQLNG TVFRSFRPQM QDLYGKASPE EKTFSMDRSE VQISFTDSPD TNAEERDIMV DTSSSTEKGK
0301: GGYYATARKR RSTSQETPSS CSAGSSKGYS SEVDIYVDTL TTMGSEVETD SEHRDHGGQG AFASAPSGKM CSDAQGAAVS RSSTFSKKED SCSSDVGSAN
0401: RDEADHSEGD VAVCVTEAKL VGGEHERTSS LEELFSQEKP VSCEHERTVS LEELLTGDIL LSEPDTRELA TESNSNAIVS NATPDGTVDA TKRAKGNNVS
0501: AISFKKTASK RCVESMELFA SKVGILPRKL SKKHDPFSDS LRNMAKELLE LKCDGTQDTD LYEFEANGDG FDVKCRKMAH PPIEIMEESF RKSISFDSPQ
0601: DVGSRECQLE VVDQESDHDV PTADSPQDSV PDENGFQHTD VYLTDITSPS PKKEEEEEEE DEEEEEEEEE EEEEGWTVAA PDEHSSAGML NHASELIQEH
0701: TEDIHTEGAS ENASDMGEDL KEVCICEERV NAEDADGCSE SDEYASEEEI TENTGEHVVP DDVISPISSK QSDDPCQVTP FTLKDADLAA AREGQDNYIP
0801: EMKHVTLLET VVETGLPKVV TEPVVSSEAA VPDDEQCCLH PETSLPQDTV LGSCELLDQN EQLQLHSSSM MSATPDPTVK TGEMHELYEE PPNPCNSIST
0901: DIFADQLAPD STDLPLPSIS SFDWMLSGLM KKSLNVLPAP SSDINLQEIS SSEDTEEAPP LPPLPPVQWR ATKPQTGSAS LFAKFGRPPR PKPPVKQLEN
1001: ENNSAPGETN QESENVQEIS WNNGFSSQKE MAQATTLCSQ TRTDLLPESD SQENNVQEGY KEYDVQSSNL FCSSEVKCNT DVTSVGDDIH ALKPPELIVI
1101: PEEAWSELVD IKPILKQEEE RKQQLINGVS DCSSIHTSGL PIEKTTVEHE RFDQKEELSA ADSNTTTDSE ENKPNGLPCQ DDIQNPDFSV QQEDKSNDIR
1201: EFSSALEEEL AKLPPHSVPE PPRYPLLQVI SHDRSMLRKA PTLVQPSSKL SDEKNTVLDQ IKNKTFNLKP VVAKRPNVMG GPRTNLQVAA ILERANAIRQ
1301: AVADDDDEDS WSE
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.