Factsheet for VIT_03s0038g03620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03860.t01
VIT_07s0141g00610.t01
VIT_17s0000g07890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT4G38430.1	VIT_17s0000g07890.t01	AT3G48040.1	21798944
AT4G38430.1	VIT_04s0023g03860.t01	AT3G51300.1	21798944
AT4G38430.1	VIT_17s0000g07890.t01	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047997	Potato	nucleus	79.73	81.11
Solyc01g111930.2.1	Tomato	nucleus	79.22	80.59
KRH29101	Soybean	cytosol, plastid	76.32	79.15
KRH24128	Soybean	cytosol	76.32	78.87
Zm00001d006269_P001	Maize	cytosol	48.72	74.48
TraesCS5A01G340900.1	Wheat	cytosol	60.48	74.27
TraesCS5B01G339200.1	Wheat	cytosol	60.65	73.71
AT4G38430.1	Thale cress	nucleus	68.48	73.36
TraesCS5D01G346100.1	Wheat	cytosol	60.48	73.35
GSMUA_Achr3P14650_001	Banana	nucleus	70.02	72.36
GSMUA_Achr1P18140_001	Banana	nucleus	66.95	71.07
CDX77457	Canola	cytosol	65.76	70.57
EER99291	Sorghum	nucleus, plastid	67.12	70.48
Bra015010.1-P	Field mustard	cytosol	65.42	70.2
Os09t0544800-01	Rice	nucleus	66.95	70.05
CDX85176	Canola	cytosol	65.25	70.02
GSMUA_Achr10P...	Banana	cytosol	60.65	68.73
Zm00001d021464_P002	Maize	nucleus, plastid	67.12	68.28
HORVU5Hr1G085510.1	Barley	nucleus, plastid	65.76	68.2
VIT_18s0001g00550.t01	Wine grape	cytosol	61.33	67.67
GSMUA_Achr2P03580_001	Banana	nucleus	55.71	64.5
VIT_08s0007g01380.t01	Wine grape	nucleus	50.09	48.28
VIT_13s0019g02710.t01	Wine grape	nucleus	48.89	48.15
VIT_15s0046g02530.t01	Wine grape	plastid	40.03	46.63
VIT_09s0002g04310.t01	Wine grape	cytosol	35.26	45.59
VIT_08s0007g01390.t01	Wine grape	nucleus	42.25	41.68
VIT_11s0016g03740.t01	Wine grape	nucleus	37.82	40.0
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	33.56	21.6

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:100260682	wikigene:100260682	MapMan:27.4.3.1	EMBL:AM475839
ProteinID:CAN75129	ProteinID:CAN75129.1	ProteinID:CBI37759	ProteinID:CBI37759.3	UniProt:D7U4U0	EMBL:FN596508
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	InterPro:IPR005512	EntrezGene:LOC100260682	wikigene:LOC100260682	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	InterPro:RopGEF	TIGR:TC52941	TIGR:TC53326
UniParc:UPI00015C89C5	ArrayExpress:VIT_03s0038g03620	EnsemblPlantsGene:VIT_03s0038g03620	EnsemblPlants:VIT_03s0038g03620.t01	unigene:Vvi.12860	RefSeq:XP_002282312
RefSeq:XP_002282312.1	RefSeq:XP_010645975.1	RefSeq:XP_010645982.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:2604327..2609233

Molecular Weight (calculated)

64629.5 Da

IEP (calculated)

6.215

GRAVY (calculated)

-0.321

Length

587 amino acids

Sequence
(BLAST)

001: MGSVSSEEGV DDQSDRCGSY SLSADVSESE SCSSFSCRRY DGEGASSSMT SSPLACRPVV GNSSFPVGPP LMLPVIGGRD VVVWGEKPEK RETDLSEAEM
101: MKERFAKLLL GEDMSGGGKG VCTALAISNA ITNLSATVFG ELWRLEPLAP QKKAMWCREM EWLLCVSDSI VELVPSIQQF PGGGTYEVMA TRPRSDLYMN
201: LPALKKLDAM LLSMLDGFCE TEFWYVDRGI IVAEADNHDA YPLSASSGRP SIRQEEKWWL PCPKVPPNGL SEDARKRLQQ CRDCTNQILK AAMAINSSVL
301: AEMEIPTAYL ETLPKNGKAC LGDIIYRYIT AEQFSPECLL DCLDLSSEHH TLEIANRIEA AVHVWKQKDW KKQPKHLKAK RSTWGGKVKG LVADTEKNQF
401: LAIRAETLLH SLRLRFPGLP QTALDMNKIQ YNKDVGQSIL ESYSRVMESL AFNIMARIDD VLYVDDAVKR CAAAESMALF GRGGLGGLPI QKRMSPSPFS
501: IQHSPFASPF ATPTFCSSTP LTGSPGRTPP SRNKMSSKGA PELKLEKPIP APEMKLEKPI PADFEKMWSY TGNLSARKVS GDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.