Factsheet for GSMUA_Achr3P14650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P17750_001
GSMUA_Achr5P03230_001
GSMUA_Achr6P36120_001
GSMUA_Achr9P10710_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	GSMUA_Achr4P17750_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr5P03230_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr9P10710_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr6P36120_001	AT3G48040.1	21798944
AT4G38430.1	GSMUA_Achr6P36120_001	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P18140_001	Banana	nucleus	80.99	83.18
TraesCS5A01G340900.1	Wheat	cytosol	65.14	77.41
TraesCS5B01G339200.1	Wheat	cytosol	65.49	77.02
TraesCS5D01G346100.1	Wheat	cytosol	64.96	76.24
Zm00001d006269_P001	Maize	cytosol	51.23	75.78
GSMUA_Achr10P...	Banana	cytosol	68.49	75.1
EER99291	Sorghum	nucleus, plastid	72.01	73.17
Os09t0544800-01	Rice	nucleus	71.83	72.73
HORVU5Hr1G085510.1	Barley	nucleus, plastid	70.77	71.02
Zm00001d021464_P002	Maize	nucleus, plastid	71.48	70.36
PGSC0003DMT400047997	Potato	nucleus	71.3	70.19
Solyc01g111930.2.1	Tomato	nucleus	71.13	70.02
VIT_03s0038g03620.t01	Wine grape	cytosol	72.36	70.02
KRH29101	Soybean	cytosol, plastid	68.84	69.08
KRH24128	Soybean	cytosol	68.66	68.66
AT4G38430.1	Thale cress	nucleus	65.49	67.88
GSMUA_Achr2P03580_001	Banana	nucleus	60.39	67.65
Bra015010.1-P	Field mustard	cytosol	63.91	66.36
CDX77457	Canola	cytosol	63.73	66.18
CDX85176	Canola	cytosol	63.56	66.0
VIT_18s0001g00550.t01	Wine grape	cytosol	58.27	62.22
Solyc04g082110.2.1	Tomato	nucleus	47.54	59.87
PGSC0003DMT400025800	Potato	nucleus	54.23	56.1
GSMUA_Achr9P03750_001	Banana	cytosol	44.37	54.08
GSMUA_Achr2P09130_001	Banana	cytosol	33.45	48.59
GSMUA_Achr5P06900_001	Banana	cytosol	35.04	47.27
GSMUA_Achr5P20570_001	Banana	nucleus	39.79	46.89
GSMUA_Achr6P14020_001	Banana	cytosol	35.39	46.64
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.1	43.62
GSMUA_Achr3P03410_001	Banana	nucleus	36.8	41.3
GSMUA_Achr8P14480_001	Banana	nucleus	18.13	39.77
GSMUA_Achr3P15410_001	Banana	nucleus	34.68	39.72
GSMUA_Achr8P14490_001	Banana	cytosol	13.2	39.06
GSMUA_Achr11P...	Banana	cytosol	21.65	36.83
GSMUA_Achr11P...	Banana	cytosol	8.63	26.92
GSMUA_Achr6P14950_001	Banana	mitochondrion	42.61	18.22

Protein Annotations

EnsemblPlants:GSMUA_Achr3P14650_001	EnsemblPlants:GSMUA_Achr3T14650_001	EnsemblPlantsGene:GSMUA_Achr3G14650_001	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI000294F1D1	UniProt:M0SEN2	MapMan:27.4.3.1	:	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G14650_001]

Coordinates

chr3:-:15042542..15047755

Molecular Weight (calculated)

62465.3 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.295

Length

568 amino acids

Sequence
(BLAST)

001: MVSLPSDEEE EEEEYASDIQ SERCESYSPS ADVSESESSG RVGRAAAAAA AGASSSFSSS PPLAPARAAL LPGVPHLVFW ESKLEKREAD FSEVEMMKER
101: FAKLLLGEDM SGGGKGVCTA LAISNAITNL SATVFGELWR LEPLAPQKKA MWRREMDWLL CVSDSIVELI PSIQEFPGGG TFEVMVSRPR ADLHMNLPAL
201: KKLDAMLIGI LDGFQDTEFW YVDRGILVAD EDGSGSCPSS SFGRPSLRQE EKWWLPCPRV PPKGLSEDSR KRLQQCRDCV NQILKASMAI NSGVLAEMEI
301: PDAYIETLPK SGKSCLGEII YNYITAEQFS PDCLLDCLDL SSEHHTLEIA NRIEAAIHVW RLKGQRRHSQ VKAKTASWKG KVKGFVADTE RSQFLAERAE
401: GLFQSLRIRF PGLPQTVVDM NKIQYNKDVG QSILESYSRV MESLAFNIMA RIDDLIFVDD ATKKCAVAEA VSIFNRGGSG GLPVQKRISP SPFSIQNTPY
501: ASPFATPTFC SSTPVIGSPR RLQTLVSKKS TQCPPQEGKI ISGDLEKVWS YTGNLSARRD AGDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.