Factsheet for TraesCS5D01G346100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G058000.1
TraesCS5A01G378600.1
TraesCS5A01G381800.1
TraesCS5B01G065600.1
TraesCS5B01G382100.1
TraesCS5B01G385300.1
TraesCS5D01G069800.1
TraesCS5D01G388500.1
TraesCS5D01G391100.1
TraesCS6A01G309000.2
TraesCS6B01G338000.1
TraesCS6D01G288300.1
TraesCS7A01G191400.1
TraesCS7B01G096200.1
TraesCS7D01G192400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	TraesCS5A01G058000.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5A01G378600.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5A01G381800.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5B01G065600.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5B01G382100.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5B01G385300.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5D01G069800.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5D01G388500.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS5D01G391100.1	AT2G30580.1	21798944
AT4G38430.1	TraesCS6A01G309000.2	AT3G48040.1	21798944
AT4G38430.1	TraesCS6B01G338000.1	AT3G48040.1	21798944
AT4G38430.1	TraesCS6D01G288300.1	AT3G48040.1	21798944
AT4G38430.1	TraesCS7A01G191400.1	AT3G48040.1	21798944
AT4G38430.1	TraesCS7B01G096200.1	AT3G48040.1	21798944
AT4G38430.1	TraesCS7D01G192400.1	AT3G48040.1	21798944
AT4G38430.1	TraesCS6A01G309000.2	AT5G62880.1	22500990
AT4G38430.1	TraesCS6B01G338000.1	AT5G62880.1	22500990
AT4G38430.1	TraesCS6D01G288300.1	AT5G62880.1	22500990
AT4G38430.1	TraesCS7A01G191400.1	AT5G62880.1	22500990
AT4G38430.1	TraesCS7B01G096200.1	AT5G62880.1	22500990
AT4G38430.1	TraesCS7D01G192400.1	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G340900.1	Wheat	cytosol	98.35	99.58
TraesCS5B01G339200.1	Wheat	cytosol	98.76	98.96
Zm00001d006269_P001	Maize	cytosol	69.21	87.24
HORVU5Hr1G085510.1	Barley	nucleus, plastid	98.14	83.92
Os09t0544800-01	Rice	nucleus	90.08	77.72
EER99291	Sorghum	nucleus, plastid	88.22	76.39
Zm00001d021464_P002	Maize	nucleus, plastid	87.19	73.14
GSMUA_Achr3P14650_001	Banana	nucleus	76.24	64.96
GSMUA_Achr1P18140_001	Banana	nucleus	71.07	62.21
VIT_03s0038g03620.t01	Wine grape	cytosol	73.35	60.48
GSMUA_Achr10P...	Banana	cytosol	64.67	60.42
PGSC0003DMT400047997	Potato	nucleus	71.69	60.14
Solyc01g111930.2.1	Tomato	nucleus	71.49	59.97
KRH29101	Soybean	cytosol, plastid	69.83	59.72
KRH24128	Soybean	cytosol	70.04	59.68
AT4G38430.1	Thale cress	nucleus	65.5	57.85
GSMUA_Achr2P03580_001	Banana	nucleus	60.33	57.59
CDX77457	Canola	cytosol	64.88	57.4
Bra015010.1-P	Field mustard	cytosol	64.67	57.22
CDX85176	Canola	cytosol	64.67	57.22
VIT_18s0001g00550.t01	Wine grape	cytosol	58.88	53.57
Solyc04g082110.2.1	Tomato	nucleus	47.73	51.22
PGSC0003DMT400025800	Potato	nucleus	55.99	49.36
TraesCS3D01G357800.1	Wheat	cytosol	51.03	45.91
TraesCS1D01G280000.1	Wheat	cytosol	52.27	45.26
TraesCS2D01G405400.1	Wheat	nucleus	42.36	43.62
TraesCS1D01G211900.1	Wheat	nucleus	42.36	42.98
TraesCS3D01G296400.1	Wheat	cytosol	40.91	42.86
TraesCS6D01G388300.1	Wheat	nucleus	40.29	41.76
TraesCS6D01G183300.1	Wheat	mitochondrion	40.7	38.7
TraesCS3D01G270200.1	Wheat	plastid	40.7	38.03
TraesCS1D01G400200.2	Wheat	plastid	39.67	33.98
TraesCS6D01G244200.1	Wheat	cytosol	35.74	31.86

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0016324	GO:GO:0030154	GO:GO:0040007	GO:GO:0080092	GO:GO:2000012
GO:GO:2001108	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF6	InterPro:RopGEF	EnsemblPlantsGene:TraesCS5D01G346100	EnsemblPlants:TraesCS5D01G346100.1	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:432512190..432514649

Molecular Weight (calculated)

53146.7 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.362

Length

484 amino acids

Sequence
(BLAST)

001: MAEIDMMKER FAKLLLGEDM SGSGKGVCTA LAVSNAITNL SATVFGELWR LEPLAPARKA MWTREMDWLL SVADSIVELI PSLQELPDGG GQFEVMVPRP
101: RSDLYMNLPA LRKLDAMLLA MIDEFKETDF WYVDRGIVVD DGGGGPCPSS SSSSCGRPSS VRQEDKWWLP CPRVPPKGLP EEARRKLQQS RDCANQILKA
201: AMAINSDVLA EMEIPEAYLE SLPKSGRSCL GEIIYRYITA EQFSPECLLD CLDLSSEHHT LEVANRIEAA IHVWRLKGQK KTAPQAKSKK SWGGKVKGLV
301: GDTKSQVLSQ RADGLLQSLR LRHPGLPQTS LDMNKIQYNK DVGQSILESY SRVLESLAFN TIARIDDVIY VDDATKKSAA AETVSIFNRG TGAPVQKKIS
401: PSPFSIQHTP YASPFATPTF CSSTPVNGNS PGRAPLPPPS KKNPPAKQPE IKVEKLFSGD VEKVWTYAGN LSARKEAGDA PERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.