Factsheet for HORVU5Hr1G085510.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G014430.6
HORVU5Hr1G093720.3
HORVU5Hr1G094160.2
HORVU6Hr1G076210.5
HORVU7Hr1G038980.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	HORVU5Hr1G014430.6	AT2G30580.1	21798944
AT4G38430.1	HORVU5Hr1G093720.3	AT2G30580.1	21798944
AT4G38430.1	HORVU5Hr1G094160.2	AT2G30580.1	21798944
AT4G38430.1	HORVU6Hr1G076210.5	AT3G48040.1	21798944
AT4G38430.1	HORVU7Hr1G038980.5	AT3G48040.1	21798944
AT4G38430.1	HORVU6Hr1G076210.5	AT5G62880.1	22500990
AT4G38430.1	HORVU7Hr1G038980.5	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G340900.1	Wheat	cytosol	83.39	98.74
TraesCS5D01G346100.1	Wheat	cytosol	83.92	98.14
TraesCS5B01G339200.1	Wheat	cytosol	83.04	97.31
Os09t0544800-01	Rice	nucleus	87.81	88.59
EER99291	Sorghum	nucleus, plastid	85.87	86.94
Zm00001d006269_P001	Maize	cytosol	58.83	86.72
Zm00001d021464_P002	Maize	nucleus, plastid	85.16	83.54
GSMUA_Achr3P14650_001	Banana	nucleus	71.02	70.77
GSMUA_Achr1P18140_001	Banana	nucleus	66.25	67.81
GSMUA_Achr10P...	Banana	cytosol	61.84	67.57
PGSC0003DMT400047997	Potato	nucleus	67.14	65.86
VIT_03s0038g03620.t01	Wine grape	cytosol	68.2	65.76
Solyc01g111930.2.1	Tomato	nucleus	66.61	65.34
KRH29101	Soybean	cytosol, plastid	64.84	64.84
KRH24128	Soybean	cytosol	64.66	64.44
AT4G38430.1	Thale cress	nucleus	61.66	63.69
CDX77457	Canola	cytosol	61.48	63.62
Bra015010.1-P	Field mustard	cytosol	61.31	63.44
CDX85176	Canola	cytosol	61.13	63.25
GSMUA_Achr2P03580_001	Banana	nucleus	56.18	62.72
VIT_18s0001g00550.t01	Wine grape	cytosol	55.48	59.02
Solyc04g082110.2.1	Tomato	nucleus	45.94	57.65
PGSC0003DMT400025800	Potato	nucleus	52.83	54.46
HORVU1Hr1G072910.3	Barley	cytosol	46.82	46.99
HORVU1Hr1G053350.4	Barley	nucleus, plastid	37.46	44.35
HORVU6Hr1G092860.2	Barley	nucleus	35.16	43.54
HORVU3Hr1G073200.1	Barley	nucleus	36.57	43.49
HORVU2Hr1G096430.13	Barley	mitochondrion	37.99	40.49
HORVU6Hr1G050860.4	Barley	mitochondrion	35.69	40.16
HORVU3Hr1G085680.2	Barley	plastid	43.46	37.67
HORVU3Hr1G062030.1	Barley	nucleus, plastid	36.04	32.85
HORVU1Hr1G086590.2	Barley	plastid	35.87	30.12
HORVU6Hr1G068660.4	Barley	nucleus	30.39	28.43
HORVU6Hr1G041610.18	Barley	plastid	30.39	22.93

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EMBL:AK376075	UniProt:F2EIU8	GO:GO:0000003
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856
GO:GO:0009860	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016324
GO:GO:0030154	GO:GO:0040007	GO:GO:0065009	GO:GO:0080092	GO:GO:2000012	GO:GO:2001108
EnsemblPlantsGene:HORVU5Hr1G085510	EnsemblPlants:HORVU5Hr1G085510.1	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	InterPro:RopGEF	UniParc:UPI0002008AF9	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EIU8]

Coordinates

chrchr5H:-:575065527..575068559

Molecular Weight (calculated)

61201.4 Da

IEP (calculated)

6.123

GRAVY (calculated)

-0.360

Length

566 amino acids

Sequence
(BLAST)

001: MASASEDEAG SERCCGSYSP SADVSGSETS SDCSAPTATT RRFPFSSSSA SASASRGLAS SSSSQLPTPS AAFFPSSVPA SDLSEIDMMK ERFAKLLLGE
101: DMSGSGKGVC TALAVSNAIT NLSATVFGEL WRLEPLAPAR KAMWTREMDW LLSVADSIVE LIPSLQELPD GGGQFEVMVP RPRSDLYMNL PALRKLDAML
201: LAMIDEFKET EFWYVDRGIV VDDGGGGPCP SSSSSSSCGR PSSVRQEEKW WLPCPRVPPK GLPEEARRKL QQSRDCANQI LKAAMAINSD VLAEMEIPDA
301: YLESLPKSGR TCLGEIIYRY ITAEQFSPEC LLDCLDLSSE HHTLEVANRI EAAIHVWRLK GQKKTTTQAK SKKSWGGKVK GLVGDTKSQV LSQRADGLLQ
401: SLRLRHPGLP QTSLDMNKIQ YNKDVGQSIL ESYSRVLESL AFNTIARIDD VIYVDDATKK SAAAETVSIF NRGTGAPVQK KISPSPFSIQ HTPYASPFAT
501: PTFCSSTPVN GNSPGRAPLP PPSKKNPPAK PEIKVEKLFS GDVEKVWTYA GNLSARKEAG DAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.