Factsheet for HORVU6Hr1G041610.18

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G068660.4	Barley	nucleus	80.67	100.0
TraesCS6A01G270900.1	Wheat	cytosol	60.93	84.16
TraesCS6B01G298000.1	Wheat	cytosol	60.93	84.16
TraesCS6D01G244200.1	Wheat	cytosol	60.67	83.79
Os02t0702600-02	Rice	cytosol	55.07	76.06
KXG30927	Sorghum	cytosol	53.2	73.89
Zm00001d017755_P002	Maize	cytosol	52.67	73.01
Zm00001d051553_P004	Maize	cytosol	51.47	71.48
GSMUA_Achr11P...	Banana	cytosol	29.47	66.17
GSMUA_Achr8P14480_001	Banana	nucleus	22.27	64.48
CDY69871	Canola	cytosol	8.4	56.25
KRH07751	Soybean	cytosol, nucleus, plastid	34.27	46.31
CDY12411	Canola	cytosol	7.87	45.74
KRH07240	Soybean	cytosol, nucleus, plastid	33.87	45.68
KRH76428	Soybean	mitochondrion, nucleus	33.6	44.76
KRH39757	Soybean	mitochondrion, nucleus	33.6	44.76
CDX84189	Canola	cytosol	28.93	44.2
AT1G31650.1	Thale cress	mitochondrion, nucleus	33.73	43.92
Solyc08g075120.2.1	Tomato	extracellular	32.67	43.52
CDY62299	Canola	cytosol, nucleus, plastid	32.4	43.39
CDY31706	Canola	cytosol	29.07	43.34
CDY12303	Canola	nucleus	32.53	43.34
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	32.4	43.16
Bra005323.1-P	Field mustard	nucleus	28.8	43.11
GSMUA_Achr8P14490_001	Banana	cytosol	10.93	42.71
Bra005322.1-P	Field mustard	nucleus	20.27	38.78
PGSC0003DMT400075550	Potato	extracellular	8.8	32.04
Solyc12g096220.1.1	Tomato	nucleus	30.13	31.04
HORVU1Hr1G053350.4	Barley	nucleus, plastid	19.73	30.96
HORVU6Hr1G050860.4	Barley	mitochondrion	20.4	30.42
HORVU5Hr1G085510.1	Barley	nucleus, plastid	22.93	30.39
HORVU1Hr1G072910.3	Barley	cytosol	22.53	29.96
HORVU3Hr1G073200.1	Barley	nucleus	18.53	29.2
HORVU2Hr1G096430.13	Barley	mitochondrion	20.27	28.63
HORVU6Hr1G092860.2	Barley	nucleus	17.33	28.45
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	33.87	27.85
HORVU3Hr1G085680.2	Barley	plastid	24.13	27.72
GSMUA_Achr11P...	Banana	cytosol	6.53	26.92
HORVU3Hr1G062030.1	Barley	nucleus, plastid	21.33	25.76
HORVU1Hr1G086590.2	Barley	plastid	20.93	23.29

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	UniProt:A0A287U1H4	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:HORVU6Hr1G041610	EnsemblPlants:HORVU6Hr1G041610.18	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RopGEF	TMHMM:TMhelix	UniParc:UPI000B4707A8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:229188464..229193298

Molecular Weight (calculated)

82732.4 Da

IEP (calculated)

9.282

GRAVY (calculated)

-0.453

Length

750 amino acids

Sequence
(BLAST)

001: ASPPPDASPP AVSIALRFRC APINPRPDRK DAPRICISPT PPISKPVNAR AISRRQCFPF PHILAARFAP PPASEKARSF VRGRWRVAVN KLKGGRGEGI
101: KICGRTDGSP PPSSLAVRRS PRLQSPPRSG STDCAGGGRL SGRRKMRMKT LACCRRRPQD FSVDMDQEPE KVTTYNGLES CIFNSSSYDE ESGVSATTGA
201: DGCVTADSLE DEVSSCSSSK DVDGSSFSSQ CLPLSKQEEH SLYELDTLDA IHLLPVKGKN PITYTLSAAD IETMKEKFAK LLLGDDVSGG ARGVCAALAL
301: SNGITNLSAT IFGELWKLEP LCEEKKIRWR KEMDWLLSPT TYMVELVPTK QNGADGCMFE IMTPKARSDV HVNLPALQKL DSMLIEVLDS MVDTEYWYVE
401: SGSRSGGRGK NNGQRQTKKW WLPSPCVPEQ GLSQFQRKRI VFQAKLVHQI LKAAKSINEQ VLHQIPIPMA VMDALPKSGR SSLGEDLYHA ITTDYIPIEE
501: IFVSLSLKTE HSVLETMNRL EGALFAWNQR ISEEKCKRSP GRHSWNFMKD NSSELEKMSA CIERVETLIQ LLKSRFPNLP PTFIDVVKVQ YNEVTSSVVM
601: TQQHAGETDC LLVHFSEKQR LLDGAGRGAR HRGGLLEGAR RGGVQHPVPG GGDHAGGRPD QEAQHAHGHP QVRPLLRRVP GGHHRDAAGP HPAVPHGPDQ
701: HGRRPLRRRR QEERGQAAHV VMRGVVALYR VMGPAAYTSC IYLLLLMVHL

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.