Factsheet for VIT_02s0087g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69871	Canola	cytosol	8.66	70.54
KRH76428	Soybean	mitochondrion, nucleus	42.98	69.63
KRH39757	Soybean	mitochondrion, nucleus	42.98	69.63
KRH07751	Soybean	cytosol, nucleus, plastid	42.11	69.19
KRH07240	Soybean	cytosol, nucleus, plastid	41.01	67.27
Solyc08g075120.2.1	Tomato	extracellular	39.69	64.3
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	39.47	63.94
AT1G31650.1	Thale cress	mitochondrion, nucleus	38.82	61.46
GSMUA_Achr8P14480_001	Banana	nucleus	17.32	61.0
CDY12303	Canola	nucleus	37.61	60.92
CDY62299	Canola	cytosol, nucleus, plastid	37.39	60.89
CDY12411	Canola	cytosol	8.55	60.47
GSMUA_Achr11P...	Banana	cytosol	21.71	59.28
Bra005323.1-P	Field mustard	nucleus	32.57	59.28
CDX84189	Canola	cytosol	31.91	59.27
CDY31706	Canola	cytosol	32.68	59.24
Bra005322.1-P	Field mustard	nucleus	23.9	55.61
PGSC0003DMT400075550	Potato	extracellular	12.06	53.4
KXG30927	Sorghum	cytosol	31.58	53.33
Zm00001d017755_P002	Maize	cytosol	31.03	52.31
Os02t0702600-02	Rice	cytosol	31.14	52.3
Zm00001d051553_P004	Maize	cytosol	30.7	51.85
TraesCS6A01G270900.1	Wheat	cytosol	30.26	50.83
TraesCS6B01G298000.1	Wheat	cytosol	30.26	50.83
TraesCS6D01G244200.1	Wheat	cytosol	30.15	50.64
GSMUA_Achr8P14490_001	Banana	cytosol	9.76	46.35
Solyc12g096220.1.1	Tomato	nucleus	36.73	46.02
HORVU6Hr1G068660.4	Barley	nucleus	27.85	41.98
GSMUA_Achr11P...	Banana	cytosol	8.33	41.76
VIT_09s0002g04310.t01	Wine grape	cytosol	18.97	38.11
VIT_15s0046g02530.t01	Wine grape	plastid	19.85	35.91
VIT_18s0001g00550.t01	Wine grape	cytosol	20.5	35.15
HORVU6Hr1G041610.18	Barley	plastid	27.85	33.87
VIT_11s0016g03740.t01	Wine grape	nucleus	20.5	33.69
VIT_03s0038g03620.t01	Wine grape	cytosol	21.6	33.56
VIT_13s0019g02710.t01	Wine grape	nucleus	21.16	32.38
VIT_08s0007g01380.t01	Wine grape	nucleus	21.38	32.02
VIT_08s0007g01390.t01	Wine grape	nucleus	19.96	30.59

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100251220	wikigene:100251220	EntrezGene:100252728	wikigene:100252728	Gene3D:2.60.120.590
MapMan:27.4.3.1	Gene3D:3.30.70.330	EMBL:AM445707	InterPro:AlkB-like	InterPro:AlkB-like_sf	ProteinID:CAN76404
ProteinID:CAN76404.1	ProteinID:CBI29214	ProteinID:CBI29214.3	ncoils:Coil	UniProt:D7TFE1	EMBL:FN595769
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
GO:GO:0065009	InterPro:IPR000504	InterPro:IPR005123	InterPro:IPR005512	InterPro:IPR012677	InterPro:IPR037151
EntrezGene:LOC100251220	wikigene:LOC100251220	EntrezGene:LOC100252728	wikigene:LOC100252728	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03759	PFAM:PF13532	InterPro:PRONE_dom	PFscan:PS50102	PFscan:PS51334	PFscan:PS51471
PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RopGEF	SUPFAM:SSF51197
SUPFAM:SSF54928	UniParc:UPI0001BE32F5	ArrayExpress:VIT_02s0087g00460	EnsemblPlantsGene:VIT_02s0087g00460	EnsemblPlants:VIT_02s0087g00460.t01	unigene:Vvi.22644
RefSeq:XP_002270503	RefSeq:XP_002270503.1	RefSeq:XP_002273482	RefSeq:XP_002273482.2	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:17792029..17808694

Molecular Weight (calculated)

102453.0 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.386

Length

912 amino acids

Sequence
(BLAST)

001: MMVMRRRLAC CTRERELSLD LDEQERIMTY NGLENCILNG HSYENESHTS RGDGCATDSL DEDDTSCSSS KDAFGSFSSK WLTMNMKKDE HGLDEWEVPE
101: SPQHFYVKEK PGYSVRFSDV EVMKERFSKL LLGEDITGGK KGLTSALALS NAITNLAVSV FGELWKLEPL SEERKVKWQR EMDWLLSPTN YMVELVPAKQ
201: SGANGRTLEI MTPKARADIH MNLPALQKLD SMLIETLDSM VDTEFWYAEG GSRAEGRTRS MSQSKRWWLP SPQVPTTGLS DPERKKLLHQ AKVVHQVFKA
301: ARAINENVLL EMPVPTLIRD ALAKSGKANL GEELYRVLTA ESSSAEEMLS SLNLKSEHSA LEAINRLEAA VFAWKERITE QVSGKSPVRT SWSFIKDPTT
401: ELDKMELILF RAEALLQQLR TRYPNLPQSF LDVAKIQYGK DIGHSILEAY SRVLGNLASS ILCRMRDILQ EDVFSNPNSP IATTSCFPGI NLTGMTETPT
501: PSLRIRHSLI DQMNMVDGRF RDPNAGASPD CEASYSDSRR SSVMATPSRS RKYKKKTTTH LKSRFEQGLN YIMGLPRFSR PKGVDGELSP NLYVANCGPA
601: VGLSFDTIAS VFSTFGEVKG VYPADDSGAR VIVSYFEESA AQAALKALDG HPCPALGGRF LHIRYSIFQP PSQVNDSVPV SLVDSELNIP GIYLLHDFVS
701: AKEEEELLAA VDKMSWKSLS KRRVQHYGYE FCYETRNVNT KQYLGKLPSF VSAIVERISS FPNLESAADI VLDQLTVNEY PPGVGLSPHI DTHSAFEGFI
801: FSLSLAGPCI MDFRRYTEGV WPKSASSSDM SVEYPDKSSS FLRRAIYLPP RSMLLLSGEA RYAWHHYIPH HKIDMVKDSV IRRGPRRVSF TFRKVRTGPC
901: QCEFPQYCDS PR

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.