Factsheet for GSMUA_Achr8P14480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	79.54	61.68
CDY69871	Canola	cytosol	19.69	45.54
CDY12411	Canola	cytosol	16.6	33.33
TraesCS6B01G298000.1	Wheat	cytosol	65.25	31.12
TraesCS6A01G270900.1	Wheat	cytosol	64.86	30.94
TraesCS6D01G244200.1	Wheat	cytosol	64.86	30.94
KXG30927	Sorghum	cytosol	63.32	30.37
Os02t0702600-02	Rice	cytosol	63.32	30.2
Zm00001d017755_P002	Maize	cytosol	62.16	29.76
CDX84189	Canola	cytosol	55.21	29.12
Zm00001d051553_P004	Maize	cytosol	60.23	28.89
CDY31706	Canola	cytosol	54.83	28.23
Bra005323.1-P	Field mustard	nucleus	54.44	28.14
HORVU6Hr1G068660.4	Barley	nucleus	64.48	27.6
KRH07751	Soybean	cytosol, nucleus, plastid	57.53	26.85
KRH07240	Soybean	cytosol, nucleus, plastid	57.53	26.8
AT1G31650.1	Thale cress	mitochondrion, nucleus	59.46	26.74
KRH39757	Soybean	mitochondrion, nucleus	57.92	26.64
CDY12303	Canola	nucleus	57.14	26.29
KRH76428	Soybean	mitochondrion, nucleus	56.76	26.11
CDY62299	Canola	cytosol, nucleus, plastid	56.37	26.07
Solyc08g075120.2.1	Tomato	extracellular	55.98	25.75
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	55.98	25.75
GSMUA_Achr2P09130_001	Banana	cytosol	35.52	23.53
Bra005322.1-P	Field mustard	nucleus	34.75	22.96
HORVU6Hr1G041610.18	Barley	plastid	64.48	22.27
GSMUA_Achr5P06900_001	Banana	cytosol	35.91	22.09
GSMUA_Achr6P14020_001	Banana	cytosol	33.98	20.42
GSMUA_Achr5P20570_001	Banana	nucleus	37.45	20.12
GSMUA_Achr3P15410_001	Banana	nucleus	38.22	19.96
GSMUA_Achr9P03750_001	Banana	cytosol	35.14	19.53
GSMUA_Achr2P03580_001	Banana	nucleus	38.22	19.53
Solyc12g096220.1.1	Tomato	nucleus	52.9	18.82
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.89	18.56
GSMUA_Achr10P...	Banana	cytosol	37.07	18.53
GSMUA_Achr3P03410_001	Banana	nucleus	35.91	18.38
GSMUA_Achr3P14650_001	Banana	nucleus	39.77	18.13
GSMUA_Achr1P18140_001	Banana	nucleus	38.22	17.9
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	61.0	17.32
GSMUA_Achr6P14950_001	Banana	mitochondrion	35.14	6.85
GSMUA_Achr8P14490_001	Banana	cytosol	2.7	3.65
GSMUA_Achr11P...	Banana	cytosol	0.77	1.1
PGSC0003DMT400075550	Potato	extracellular	0.77	0.97

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	EnsemblPlantsGene:GSMUA_Achr8G14480_001	EnsemblPlants:GSMUA_Achr8P14480_001	EnsemblPlants:GSMUA_Achr8T14480_001
InterPro:IPR005512	UniProt:M0TQF1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF2	InterPro:RopGEF	UniParc:UPI00029578DB	SEG:seg	:	:

Description

ATROPGEF7/ROPGEF7, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G14480_001]

Coordinates

chr8:+:11704668..11706310

Molecular Weight (calculated)

28351.9 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.265

Length

259 amino acids

Sequence
(BLAST)

001: MSGADGCAAT DSPDEDASSC SSSKDALGSS FSRCLSSSTQ DEHLLDEWDT LNGLHHFCIN GKGPITYSID VSDVEAMKEK FAQLLLGEDV SGGIKGISTA
101: LALSHAITGL AASIFGEFWK LEPLSERIKS RWLREMDWLL SPINYMVELV PAKQNGANGR MLEIMTPKAR SDVHTTLPAL RKLDLMLIEV LDSMVGTEFW
201: YTELGGRADG CNLYNGTKQG KKWRLPTPRV PESGVSPSQR RKLAFQGKFV HQILKAAKS

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.