Factsheet for GSMUA_Achr3P15410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P09130_001	Banana	cytosol	64.52	81.84
GSMUA_Achr5P06900_001	Banana	cytosol	62.9	74.11
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	63.51	73.09
GSMUA_Achr6P14020_001	Banana	cytosol	62.5	71.93
Solyc07g032730.2.1	Tomato	nucleus	55.44	67.24
GSMUA_Achr3P03410_001	Banana	nucleus	68.15	66.8
Solyc06g066650.2.1	Tomato	nucleus	58.27	61.62
KRH44350	Soybean	nucleus	55.65	60.79
PGSC0003DMT400042632	Potato	nucleus	56.85	60.26
Solyc03g120650.2.1	Tomato	cytosol	59.48	58.76
PGSC0003DMT400006531	Potato	cytosol	59.07	58.37
PGSC0003DMT400040374	Potato	nucleus	54.84	57.87
Solyc12g044270.1.1	Tomato	nucleus	59.27	56.0
KRH09881	Soybean	cytosol	59.88	55.72
KRH39304	Soybean	nucleus	58.06	55.38
KRH23439	Soybean	nucleus	59.48	55.24
VIT_11s0016g03740.t01	Wine grape	nucleus	60.89	54.41
KRH47282	Soybean	nucleus	57.86	53.35
Solyc12g007150.1.1	Tomato	nucleus	59.68	53.33
PGSC0003DMT400001020	Potato	nucleus	59.48	53.15
PGSC0003DMT400097197	Potato	nucleus	59.48	52.4
KRH48369	Soybean	mitochondrion	59.07	52.14
Bra020048.1-P	Field mustard	nucleus	51.41	51.62
CDY44926	Canola	nucleus	51.41	51.62
CDY42277	Canola	nucleus	51.01	51.21
AT5G19560.4	Thale cress	mitochondrion	52.22	50.59
CDX92519	Canola	plastid	49.8	49.7
Bra006510.1-P	Field mustard	cytosol	48.39	49.18
CDX88884	Canola	cytosol, plastid	48.39	49.18
CDY58963	Canola	cytosol	36.69	48.92
Bra002246.1-P	Field mustard	plastid	49.8	47.78
CDX70882	Canola	cytosol	48.19	47.33
GSMUA_Achr9P03750_001	Banana	cytosol	39.31	41.85
GSMUA_Achr5P20570_001	Banana	nucleus	39.31	40.46
GSMUA_Achr8P14480_001	Banana	nucleus	19.96	38.22
GSMUA_Achr2P03580_001	Banana	nucleus	38.1	37.28
GSMUA_Achr8P14490_001	Banana	cytosol	13.91	35.94
GSMUA_Achr1P18140_001	Banana	nucleus	39.52	35.44
GSMUA_Achr10P...	Banana	cytosol	36.69	35.14
GSMUA_Achr3P14650_001	Banana	nucleus	39.72	34.68
GSMUA_Achr11P...	Banana	cytosol	22.58	33.53
GSMUA_Achr11P...	Banana	cytosol	9.88	26.92
GSMUA_Achr6P14950_001	Banana	mitochondrion	40.32	15.06

Protein Annotations

EnsemblPlants:GSMUA_Achr3P15410_001	EnsemblPlants:GSMUA_Achr3T15410_001	EnsemblPlantsGene:GSMUA_Achr3G15410_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI0002955612	UniProt:M0SEV7	MapMan:27.4.3.1	:

Description

ATROPGEF7/ROPGEF7, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G15410_001]

Coordinates

chr3:-:16438662..16441809

Molecular Weight (calculated)

55768.3 Da

IEP (calculated)

4.506

GRAVY (calculated)

-0.666

Length

496 amino acids

Sequence
(BLAST)

001: MHREEMLEDS GNRAHTLSFE DAGGGGSLAD DKVLVRSQGS TTASDASEGQ QIGTAPDRSP EEGPKSRPRK DGNGPPSDME LMKEKFAKLL LGEDMSGAGT
101: GVSSALALSN AITNLAASVF GEQWRLEPMS AERKARWRKE IDWLLSVTDH IVEFVASQQT SEDGKHMEIM ITQQRKDLRM NIPALRKLDA MLIEYLDNFK
201: DQKEFWYVSR DADESEKGNA QRTDDKWWLP TVRVPPNGLS EASRKWIQHQ KELVNQVLKA AMAINANVLM EMEIPEDYIE SLPKNGRSSL GDALYRNITE
301: EDFDAEAFLE SADLSTEHKI LDLKDRIEAS VVIWKRKMHN KDVKSSWVSA VSWGKREQFE DRAETILLIL KHRFPGIPQS QLDISKIQYN KDVGYSILES
401: YSRILESLAF TVMSRIEDVL RADSLAQDPA HGKLLDSEQV TGTAKSIVDT AEETEKLNKL ESNGSMTLSD FMEWEMDQDT ETKEEEEEES ETGGGA

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.