Factsheet for PGSC0003DMT400042632

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066650.2.1	Tomato	nucleus	96.79	96.59
GSMUA_Achr5P06900_001	Banana	cytosol	61.54	68.41
PGSC0003DMT400006531	Potato	cytosol	72.44	67.53
GSMUA_Achr6P14020_001	Banana	cytosol	62.18	67.52
GSMUA_Achr2P09130_001	Banana	cytosol	55.34	66.24
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	59.4	64.5
KRH44350	Soybean	nucleus	62.39	64.32
PGSC0003DMT400097197	Potato	nucleus	76.28	63.41
TraesCS6A01G196000.1	Wheat	cytosol	58.55	62.84
OQU84790	Sorghum	cytosol	57.69	61.36
GSMUA_Achr3P03410_001	Banana	nucleus	64.53	59.68
AT1G79860.1	Thale cress	nucleus	63.46	57.67
Zm00001d053307_P002	Maize	cytosol, plastid	59.4	57.56
CDX67930	Canola	nucleus	59.62	57.29
KRH09881	Soybean	cytosol	65.17	57.22
KRH23439	Soybean	nucleus	65.17	57.12
TraesCSU01G211800.1	Wheat	cytosol	39.74	57.06
GSMUA_Achr3P15410_001	Banana	nucleus	60.26	56.85
TraesCSU01G217800.1	Wheat	cytosol	40.6	55.88
TraesCSU01G211700.1	Wheat	cytosol	40.6	55.88
TraesCS6D01G183300.1	Wheat	mitochondrion	60.47	55.6
HORVU6Hr1G050860.4	Barley	mitochondrion	59.4	55.27
Bra003536.1-P	Field mustard	nucleus	60.47	55.17
Os02t0272300-01	Rice	plasma membrane	60.47	55.17
KRH47282	Soybean	nucleus	62.82	54.65
PGSC0003DMT400040374	Potato	nucleus	54.27	54.04
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	60.68	52.89
PGSC0003DMT400001020	Potato	nucleus	62.61	52.79
Zm00001d016001_P002	Maize	mitochondrion	58.55	51.31
PGSC0003DMT400000136	Potato	nucleus	37.39	36.69
PGSC0003DMT400067654	Potato	nucleus	40.6	35.71
PGSC0003DMT400047997	Potato	nucleus	42.31	34.32
PGSC0003DMT400025800	Potato	nucleus	39.74	33.88
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	37.39	31.08
PGSC0003DMT400005554	Potato	cytosol, plastid	39.74	28.22
PGSC0003DMT400049230	Potato	nucleus	41.24	27.89
PGSC0003DMT400075550	Potato	extracellular	11.54	26.21

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:102584199	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
UniProt:M1BDD7	PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400016533	PGSC:PGSC0003DMG400016533	EnsemblPlants:PGSC0003DMT400042632	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI00029532AF	RefSeq:XP_006356260.2

Description

Pollen-specific kinase partner protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016533]

Coordinates

chr6:-:49307936..49310658

Molecular Weight (calculated)

52859.1 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.522

Length

468 amino acids

Sequence
(BLAST)

001: MILETNNNSM AGFKSRLAND STVTSSRSDM ELMKEKFSKL LLGEDMSGGG KGVSSALALS NAITNLAASV FGEMKRLEPM PAERKAKWRK EIGWLLSVTD
101: HIVEFVPCRQ VSKAGTNMEV MVTKQRSDLQ MNIPALRKLD AMLIDCLDGL NDQSEFSYVS KDDESQEETN SRKDDKWWIP TPKVHPSGLS DPMRIWLQFQ
201: KDSVIQVHKA SMAINAQVLS EMEIPESYIE SLPKNGRASL GDSIYKSITD EYFDPDYFFT TMDMSSEHKI LDLKDRIEAS VVIWKRKMNA KDGKSSWGST
301: ISFEKREMFE ERAEVILLIL KQRFPGIPQS KLDISKIQYN KDVGQAILES YSRIIESRAF TIMSRIEDVL QADAIAQNPS NGEVKRPLSD KEVGKLNSAE
401: NGASLTLLDF IGWTPDQEDN NTKKDLKEDP TYKDINAKIK CNPSSIVTNK RFSYLENLGM CRSPTARH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.