Factsheet for Bra003536.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67930	Canola	nucleus	90.06	94.87
AT1G79860.1	Thale cress	nucleus	85.77	85.44
KRH44350	Soybean	nucleus	59.65	67.4
KRH09881	Soybean	cytosol	65.89	63.41
KRH23439	Soybean	nucleus	65.3	62.73
Solyc06g066650.2.1	Tomato	nucleus	56.14	61.41
KRH47282	Soybean	nucleus	63.74	60.78
PGSC0003DMT400042632	Potato	nucleus	55.17	60.47
Bra030396.1-P	Field mustard	nucleus	61.21	58.47
Solyc03g120650.2.1	Tomato	cytosol	57.12	58.37
PGSC0003DMT400006531	Potato	cytosol	56.92	58.17
Solyc12g044270.1.1	Tomato	nucleus	59.45	58.1
Bra018956.1-P	Field mustard	nucleus	60.43	57.84
Bra021162.1-P	Field mustard	nucleus	48.93	57.83
Bra013249.1-P	Field mustard	nucleus, plastid	57.31	56.76
Bra015068.1-P	Field mustard	nucleus	57.31	56.43
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.39	55.25
PGSC0003DMT400097197	Potato	nucleus	59.26	54.0
Bra027189.1-P	Field mustard	nucleus	53.61	51.89
Bra020048.1-P	Field mustard	nucleus	49.12	51.01
Bra006510.1-P	Field mustard	cytosol	47.17	49.59
Bra002246.1-P	Field mustard	plastid	47.56	47.2
Bra004945.1-P	Field mustard	nucleus, plastid	34.7	38.7
Bra037342.1-P	Field mustard	cytosol	35.48	38.16
Bra000971.1-P	Field mustard	nucleus	35.48	38.08
Bra015010.1-P	Field mustard	cytosol	38.6	36.2
Bra009621.1-P	Field mustard	nucleus	38.21	35.0
Bra009152.1-P	Field mustard	cytosol, plastid	38.79	33.45
Bra007183.1-P	Field mustard	cytosol, plastid	36.84	33.1
Bra005323.1-P	Field mustard	nucleus	32.16	32.93
Bra005322.1-P	Field mustard	nucleus	22.22	29.08
Bra021161.1-P	Field mustard	nucleus	3.12	12.03

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra003536	EnsemblPlants:Bra003536.1	EnsemblPlants:Bra003536.1-P
ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0009860
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0065009	GO:GO:0080092	GO:GO:0090406	InterPro:IPR005512	UniProt:M4CH53	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI00025419C7
SEG:seg	:	:	:	:	:

Description

AT1G79860 (E=6e-234) ATROPGEF12, ROPGEF12, MEE64 | ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12); Rho guanyl-nucleotide exchange factor

Coordinates

chrA07:-:13678585..13681092

Molecular Weight (calculated)

57789.4 Da

IEP (calculated)

5.351

GRAVY (calculated)

-0.615

Length

513 amino acids

Sequence
(BLAST)

001: MVRASEQEQE SYRSKLFNFK WRNNDNNNAG KQSNSPISKP GLDEAAAGSQ EVEPLTIIHP NKSPLVSRPS GDDAALAAAQ AREKQLLADM EQMKERFSKL
101: LLGEDNSGGG KGVCSALALS NAITNLAASV FGEQRRLEPM PADRRARWRR EIDWLLSVTD YVVEFAPSQQ KNKDGTTMEI MTTRQRNDLH MNIPALRKLD
201: AMLIDCLDNF KDQSEFGYIS KDSPDSDNTK GHDEKWWIPK VKVPPDGLSE ASRRFLQYQK DCVNQVLKAA MAINAQVLFE MEIPESYIDS LPKNGRASLG
301: DQMYKNITVE FFNPDQFLNS MDMSSEHKIL DLKNKIEASI IIWKRKMVQK DNKPSAPWAS GVSLEKREVF EERAETILLI LKHRYPGISQ SSLDISKIQF
401: SKDVGQSVLE SYSRILESLA YTVLSRINDV LDADRAVSKR STPMEPEEET LVGSMTLSDF MGWDFDQGNE DLDSKKDMSS DDKLVKEKLN VVATKKTSYL
501: ETLGGVNSPT ARH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.