Factsheet for Bra015010.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010128.1-P
Bra012858.1-P
Bra018304.1-P
Bra021651.1-P
Bra022807.1-P
Bra029240.1-P
Bra035878.1-P
Bra036819.1-P
Bra038892.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	Bra018304.1-P	AT2G30580.1	21798944
AT4G38430.1	Bra021651.1-P	AT2G30580.1	21798944
AT4G38430.1	Bra022807.1-P	AT2G30580.1	21798944
AT4G38430.1	Bra012858.1-P	AT3G51300.1	21798944
AT4G38430.1	Bra036819.1-P	AT3G51300.1	21798944
AT4G38430.1	Bra038892.1-P	AT3G51300.1	21798944
AT4G38430.1	Bra010128.1-P	AT5G62880.1	22500990
AT4G38430.1	Bra029240.1-P	AT5G62880.1	22500990
AT4G38430.1	Bra035878.1-P	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77457	Canola	cytosol	99.45	99.45
AT4G38430.1	Thale cress	nucleus	86.29	86.13
KRH29101	Soybean	cytosol, plastid	68.92	66.61
KRH24128	Soybean	cytosol	68.56	66.02
PGSC0003DMT400047997	Potato	nucleus	69.1	65.51
Solyc01g111930.2.1	Tomato	nucleus	69.1	65.51
VIT_03s0038g03620.t01	Wine grape	cytosol	70.2	65.42
TraesCS5A01G340900.1	Wheat	cytosol	56.86	65.06
TraesCS5D01G346100.1	Wheat	cytosol	57.22	64.67
TraesCS5B01G339200.1	Wheat	cytosol	57.04	64.6
GSMUA_Achr3P14650_001	Banana	nucleus	66.36	63.91
Zm00001d006269_P001	Maize	cytosol	44.06	62.76
EER99291	Sorghum	nucleus, plastid	63.44	62.08
GSMUA_Achr10P...	Banana	cytosol	58.5	61.78
GSMUA_Achr1P18140_001	Banana	nucleus	62.34	61.66
Os09t0544800-01	Rice	nucleus	63.07	61.5
HORVU5Hr1G085510.1	Barley	nucleus, plastid	63.44	61.31
Zm00001d021464_P002	Maize	nucleus, plastid	62.71	59.45
GSMUA_Achr2P03580_001	Banana	nucleus	53.56	57.79
Bra004945.1-P	Field mustard	nucleus, plastid	38.94	46.3
Bra009621.1-P	Field mustard	nucleus	46.98	45.89
Bra037342.1-P	Field mustard	cytosol	39.67	45.49
Bra000971.1-P	Field mustard	nucleus	39.67	45.4
Bra009152.1-P	Field mustard	cytosol, plastid	45.52	41.85
Bra007183.1-P	Field mustard	cytosol, plastid	42.23	40.46
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.11	40.2
Bra021162.1-P	Field mustard	nucleus	31.44	39.63
Bra015068.1-P	Field mustard	nucleus	36.93	38.77
Bra003536.1-P	Field mustard	nucleus	36.2	38.6
Bra018956.1-P	Field mustard	nucleus	37.48	38.25
Bra030396.1-P	Field mustard	nucleus	37.48	38.17
Bra020048.1-P	Field mustard	nucleus	34.37	38.06
Bra013249.1-P	Field mustard	nucleus, plastid	35.83	37.84
Bra006510.1-P	Field mustard	cytosol	33.46	37.5
Bra027189.1-P	Field mustard	nucleus	35.65	36.79
Bra002246.1-P	Field mustard	plastid	34.55	36.56
Bra005323.1-P	Field mustard	nucleus	30.53	33.33
Bra005322.1-P	Field mustard	nucleus	21.02	29.34
Bra021161.1-P	Field mustard	nucleus	1.83	7.52

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra015010	EnsemblPlants:Bra015010.1	EnsemblPlants:Bra015010.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856
GO:GO:0009860	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016324
GO:GO:0030154	GO:GO:0040007	GO:GO:0065009	GO:GO:0080092	GO:GO:2000012	GO:GO:2001108
InterPro:IPR005512	UniProt:M4DET8	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF6	InterPro:RopGEF	UniParc:UPI0002540D70	SEG:seg	:	:

Description

AT4G38430 (E=3e-146) ATROPGEF1, ROPGEF1 | ROPGEF1; Rho guanyl-nucleotide exchange factor/ protein binding

Coordinates

chrA07:-:4301480..4303430

Molecular Weight (calculated)

60519.9 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.428

Length

547 amino acids

Sequence
(BLAST)

001: MASLSSEEDE ECSSERCGSY SPSADVSCQS ESSSSFFGEA SSPRRFYFPA PVMLPVIGGK DVVWDDKSEK QGSDLSEIEM MKERFAKLLL GEDMSGGGKG
101: VCTALAISNA ITNLSATVFG ELWRLEPLAP QKKAMWRREL EWLLCVCDSI VELIPSTQQF PGGGGTYEIM ETRPRSDLYA NLPALKKLDA MLIDMLDGFS
201: DTEFWYTDRG IGLGDCEKES FDSPASRGGG CGRPSFRQEE KWWLPCPKVP PNGLSEETRK KLQQCRDFAN QILKAALAIN AGVLAEMEIP DPYLETLPKS
301: GKECLGEIIH QYLTANKFSP ECLLDCIDLS SEHQTLEIAN RIEAAVHVWR QKKKGRKHKN QGKLKLSSWS GKVKGLVNDS ERNEFLAQRA ETLLQSLRIR
401: FPGLPQTTLD MNKIQYNRDV GHGVLESYSR VLESMAFNVT ARIDDVLYVD DAIRRSVSVT ESPALFSIGG LNGRPAAQKP FSAQCSPYGS PFATPSLSIA
501: SRSPRRAPLL YRSGTREKGV LGESEKAWSY AGNLSSRRVT GVTPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.